labelData: This function generate positive and negative pseudo-labels.

In jyxi7676/SiftCell: SiftCell framework to identify cell containing and cell free droplets

This function generate positive and negative pseudo-labels.

Description

This function generate positive and negative pseudo-labels.

Usage

labelData(
  rawDGE,
  shfDGE,
  rawPC,
  shfPC,
  HVG,
  flagCells,
  outlier,
  dataName,
  expectedN
)

Arguments

rawDGE	digital expression matrix of the original data
shfDGE	digital expression matrix of the shuffle data
rawPC	top one 100PCs of raw DGE
shfPC	top one 100PCs of shuffle DGE
HVG	a vector with highly variable genes
flagCells	a vector of flagged cells
outlier	a vector of barcodes that are identified as "pseudo-positive"
dataName	data name
expectedN	expected number of cell-containing droplets

Value

returns xxx

jyxi7676/SiftCell documentation built on July 27, 2023, 7:13 a.m.