API for kaiqiong/SOMNiBUS
Smooth modeling of bisulfite sequencing
| Global functions | |
|---|---|
| .onAttach | Source code |
| .onLoad | Source code |
| Error | Source code |
| GetFilenameSuffixes | Source code |
| GetLogFile | Source code |
| GetLogLevel | Source code |
| GetTimeStampFormat | Source code |
| Message | Source code |
| PrintLogMessage | Source code |
| RAdat | Man page |
| RAdat2 | Man page |
| SetFilenameSuffixes | Source code |
| SetLogFile | Source code |
| SetLogLevel | Source code |
| SetTimeStampFormat | Source code |
| Warning | Source code |
| binomRegMethModel | Man page Source code |
| binomRegMethModelChecks | Source code |
| binomRegMethModelInit | Source code |
| binomRegMethModelPlot | Man page Source code |
| binomRegMethModelPred | Man page Source code |
| binomRegMethModelPredChecks | Source code |
| binomRegMethModelSim | Man page Source code |
| binomRegMethModelSimChecks | Source code |
| binomRegMethModelSummary | Source code |
| binomRegMethModelUpdate | Source code |
| binomRegMethModelUpdateChecks | Source code |
| binomRegMethPredPlot | Man page Source code |
| estimateBZ | Source code |
| estimateBeta | Source code |
| estimateSE | Source code |
| estimateVar | Source code |
| extractDesignMatrix | Source code |
| fitEM | Source code |
| fitGam | Source code |
| formatFromBSmooth | Man page Source code |
| formatFromBSseq | Man page Source code |
| formatFromBismark | Man page Source code |
| hessianComp | Source code |
| phiFletcher | Source code |
| regResOneSmooth | Source code |
| runSOMNiBUS | Man page Source code |
| splitDataByBed | Man page Source code |
| splitDataByChromatin | Man page Source code |
| splitDataByDensity | Man page Source code |
| splitDataByGRanges | Man page Source code |
| splitDataByGene | Man page Source code |
| splitDataByRegion | Man page Source code |
| testStat | Source code |
