RAdat: Methylation data from a rheumatoid arthritis study

RAdatR Documentation

Methylation data from a rheumatoid arthritis study

Description

A dataset containing methylation levels on one targeted region on chromosome 4 near gene BANK1 from cases with rheumatoid arthritis (RA) and controls.

Usage

RAdat

Format

A data frame of 5289 rows and 6 columns. Each row represents a CpG site for a sample. Columns include in order:

Meth_Counts

Number of methylated reads

Total_Counts

Total number of reads; read-depth

Position

Genomic position (in bp) for the CpG site

ID

indicates which sample the CpG site belongs to

T_cell

whether a sample is from T cell or monocyte

RA

whether a sample is an RA patient or control

Details

This example data include methylation levels of cell type separated blood samples of 22 rheumatoid arthritis (RA) patients and 21 healthy individuals. In the data set, 123 CpG sites are measured and there are 25 samples from circulating T cells and 18 samples from monocytes.

Source

Dr. Marie Hudson (McGill University)


kaiqiong/SOMNiBUS documentation built on June 3, 2022, 9:16 a.m.