A dataset containing methylation levels on one targeted region on chromosome 4 near gene BANK1 from cases with rheumatoid arthritis (RA) and controls.
A data frame of 5289 rows and 6 columns. Each row represents a CpG site for a sample. Columns include in order:
Number of methylated reads
Total number of reads; read-depth
Genomic position (in bp) for the CpG site
indicates which sample the CpG site belongs to
whether a sample is from T cell or monocyte
whether a sample is an RA patient or control
This example data include methylation levels of cell type separated blood samples of 22 rheumatoid arthritis (RA) patients and 21 healthy individuals. In the data set, 123 CpG sites are measured and there are 25 samples from circulating T cells and 18 samples from monocytes.
Dr. Marie Hudson (McGill University)
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