RAdat: Methylation data from a rheumatoid arthritis study
In kaiqiong/SOMNiBUS: Smooth modeling of bisulfite sequencing
RAdat R Documentation
Methylation data from a rheumatoid arthritis study
Description
A dataset containing methylation levels on one targeted region on chromosome
4 near gene BANK1 from cases with rheumatoid arthritis (RA) and controls.
Usage
RAdat
Format
A data frame of 5289 rows and 6 columns. Each row represents a CpG
site for a sample. Columns include in order:
- Meth_Counts
Number of methylated reads
- Total_Counts
Total number of reads; read-depth
- Position
Genomic position (in bp) for the CpG site
- ID
indicates which sample the CpG site belongs to
- T_cell
whether a sample is from T cell or monocyte
- RA
whether a sample is an RA patient or control
Details
This example data include methylation levels of cell type separated blood
samples of 22 rheumatoid arthritis (RA) patients and 21 healthy individuals.
In the data set, 123 CpG sites are measured and there are 25 samples from
circulating T cells and 18 samples from monocytes.
Source
Dr. Marie Hudson (McGill University)
kaiqiong/SOMNiBUS documentation built on Feb. 24, 2023, 5:38 a.m.
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| RAdat | R Documentation |
Methylation data from a rheumatoid arthritis study
Description
A dataset containing methylation levels on one targeted region on chromosome 4 near gene BANK1 from cases with rheumatoid arthritis (RA) and controls.
Usage
RAdat
Format
A data frame of 5289 rows and 6 columns. Each row represents a CpG site for a sample. Columns include in order:
- Meth_Counts
Number of methylated reads
- Total_Counts
Total number of reads; read-depth
- Position
Genomic position (in bp) for the CpG site
- ID
indicates which sample the CpG site belongs to
- T_cell
whether a sample is from T cell or monocyte
- RA
whether a sample is an RA patient or control
Details
This example data include methylation levels of cell type separated blood samples of 22 rheumatoid arthritis (RA) patients and 21 healthy individuals. In the data set, 123 CpG sites are measured and there are 25 samples from circulating T cells and 18 samples from monocytes.
Source
Dr. Marie Hudson (McGill University)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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