Man pages for kaiqiong/SOMNiBUS
Smooth modeling of bisulfite sequencing

binomRegMethModelA smoothed-EM algorithm to estimate covariate effects and...
binomRegMethModelPlotPlot the smooth covariate effect
binomRegMethModelPredA smoothed-EM algorithm to estimate covariate effects and...
binomRegMethModelSimSimulate Bisulfite sequencing data from specified smooth...
binomRegMethPredPlotPlot the predicted methylation levels
formatFromBismarkParsing output from the Bismark alignment suite
formatFromBSmoothParsing output from the BSmooth alignment suite
formatFromBSseqParsing output from the BSseq package
RAdatMethylation data from a rheumatoid arthritis study
RAdat2A simulated methylation dataset based on a real data.
runSOMNiBUSWrapper function running the smoothed-EM algorithm to...
splitDataByBedSplit methylation data into regions based on the genomic...
splitDataByChromatinSplit methylation data into regions based on the chromatin...
splitDataByDensitySplit methylation data into regions based on the density of...
splitDataByGeneSplit methylation data into regions based on the genes...
splitDataByGRangesSplit methylation data into regions based on the genomic...
splitDataByRegionSplit methylation data into regions based on the spacing of...
kaiqiong/SOMNiBUS documentation built on June 3, 2022, 9:16 a.m.