This example data include methylation levels on a region with 208 CpGs for 116 blood samples.
A data frame of 6064 rows and 13 columns. Each row represents a CpG site for a sample. Columns include in order:
Number of methylated reads
Total number of reads; read-depth
Genomic position (in bp) for the CpG site
indicates which sample the CpG site belongs to
binary indicator for a biomarker anti-citrullinated protein antibody
1-current or ex-smoker; 0-non-smoker
1-Smoking info is NA; 0-Smoking info is available
PC1 for the cell type proportions
PC2 for the cell type proportions
PC3 for the cell type proportions
PC4 for the cell type proportions
simulation is based a real data set provided by PI Dr. Sasha Bernatsky (McGill University)
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