Files in kaiqiong/SOMNiBUS
Smooth modeling of bisulfite sequencing

.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
NEWS
R/RAdat.R R/RAdat2.R R/binomRegMethModel.R R/binomRegMethModelPlot.R R/binomRegMethModelPred.R R/binomRegMethModelSim.R R/binomRegMethModelUpdate.R R/binomRegMethPredPlot.R R/format.R R/rlogging.R R/runSOMNiBUS.R R/utils.R README.md
data/RAdat.rda
data/RAdat2.rda
inst/CITATION
inst/Figs/BANK1.pdf
inst/Figs/BANK1.png
inst/WORDLIST
inst/annotations.yml
inst/extdata/ev_bt2_tab/sim2.cpg.tsv
man/RAdat.Rd man/RAdat2.Rd man/binomRegMethModel.Rd man/binomRegMethModelPlot.Rd man/binomRegMethModelPred.Rd man/binomRegMethModelSim.Rd man/binomRegMethPredPlot.Rd man/formatFromBSmooth.Rd man/formatFromBSseq.Rd man/formatFromBismark.Rd man/runSOMNiBUS.Rd man/splitDataByBed.Rd man/splitDataByChromatin.Rd man/splitDataByDensity.Rd man/splitDataByGRanges.Rd man/splitDataByGene.Rd man/splitDataByRegion.Rd tests/testthat.R
tests/testthat/data/BEM.obj.RA.rda
tests/testthat/data/BEM.obj.rda
tests/testthat/data/ev_bt2_tab/sim2.cpg.tsv
tests/testthat/data/ref_input_BSMethEMUpdate.rda
tests/testthat/data/ref_input_binomRegMethModelSummary.RA.rda
tests/testthat/data/ref_input_binomRegMethModelSummary.rda
tests/testthat/data/ref_input_hessianComp.rda
tests/testthat/data/test_splitDataByBED.bed
tests/testthat/data/test_splitDataByBED_2.bed
tests/testthat/helper.R tests/testthat/test_binomRegMethModelPlot.R tests/testthat/test_binomRegMethModelPred.R tests/testthat/test_binomRegMethModelSim.R tests/testthat/test_binomRegMethModelSummary.R tests/testthat/test_binomRegMethModelUpdate.R tests/testthat/test_binomRegMethPredPlot.R tests/testthat/test_format.R tests/testthat/test_groundzero.R tests/testthat/test_hessianComp.R tests/testthat/test_runSOMNiBUS.R tests/testthat/test_splitDataByBed.R tests/testthat/test_splitDataByChromatin.R tests/testthat/test_splitDataByDensity.R tests/testthat/test_splitDataByGRanges.R tests/testthat/test_splitDataByGene.R tests/testthat/test_splitDataByRegion.R vignettes/SOMNiBUS.Rmd
vignettes/bibliography.bib
kaiqiong/SOMNiBUS documentation built on June 3, 2022, 9:16 a.m.