Files in kaiqiong/SOMNiBUS
Smooth modeling of bisulfite sequencing
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
NEWS
R/RAdat.R
R/RAdat2.R
R/binomRegMethModel.R
R/binomRegMethModelPlot.R
R/binomRegMethModelPred.R
R/binomRegMethModelSim.R
R/binomRegMethModelUpdate.R
R/binomRegMethPredPlot.R
R/format.R
R/rlogging.R
R/runSOMNiBUS.R
R/utils.R
README.md
data/RAdat.rda
data/RAdat2.rda
inst/CITATION
inst/Figs/BANK1.pdf
inst/Figs/BANK1.png
inst/WORDLIST
inst/annotations.yml
inst/extdata/ev_bt2_tab/sim2.cpg.tsv
man/RAdat.Rd
man/RAdat2.Rd
man/binomRegMethModel.Rd
man/binomRegMethModelPlot.Rd
man/binomRegMethModelPred.Rd
man/binomRegMethModelSim.Rd
man/binomRegMethPredPlot.Rd
man/formatFromBSmooth.Rd
man/formatFromBSseq.Rd
man/formatFromBismark.Rd
man/runSOMNiBUS.Rd
man/splitDataByBed.Rd
man/splitDataByChromatin.Rd
man/splitDataByDensity.Rd
man/splitDataByGRanges.Rd
man/splitDataByGene.Rd
man/splitDataByRegion.Rd
tests/testthat.R
tests/testthat/data/BEM.obj.RA.rda
tests/testthat/data/BEM.obj.rda
tests/testthat/data/ev_bt2_tab/sim2.cpg.tsv
tests/testthat/data/ref_input_BSMethEMUpdate.rda
tests/testthat/data/ref_input_binomRegMethModelSummary.RA.rda
tests/testthat/data/ref_input_binomRegMethModelSummary.rda
tests/testthat/data/ref_input_hessianComp.rda
tests/testthat/data/test_splitDataByBED.bed
tests/testthat/data/test_splitDataByBED_2.bed
tests/testthat/helper.R
tests/testthat/test_binomRegMethModelPlot.R
tests/testthat/test_binomRegMethModelPred.R
tests/testthat/test_binomRegMethModelSim.R
tests/testthat/test_binomRegMethModelSummary.R
tests/testthat/test_binomRegMethModelUpdate.R
tests/testthat/test_binomRegMethPredPlot.R
tests/testthat/test_format.R
tests/testthat/test_groundzero.R
tests/testthat/test_hessianComp.R
tests/testthat/test_runSOMNiBUS.R
tests/testthat/test_splitDataByBed.R
tests/testthat/test_splitDataByChromatin.R
tests/testthat/test_splitDataByDensity.R
tests/testthat/test_splitDataByGRanges.R
tests/testthat/test_splitDataByGene.R
tests/testthat/test_splitDataByRegion.R
vignettes/SOMNiBUS.Rmd
vignettes/bibliography.bib
