Man pages for kaiqiong/SOMNiBUS
Smooth modeling of bisulfite sequencing
| binomRegMethModel | A smoothed-EM algorithm to estimate covariate effects and... |
| binomRegMethModelPlot | Plot the smooth covariate effect |
| binomRegMethModelPred | A smoothed-EM algorithm to estimate covariate effects and... |
| binomRegMethModelSim | Simulate Bisulfite sequencing data from specified smooth... |
| binomRegMethPredPlot | Plot the predicted methylation levels |
| formatFromBismark | Parsing output from the Bismark alignment suite |
| formatFromBSmooth | Parsing output from the BSmooth alignment suite |
| formatFromBSseq | Parsing output from the BSseq package |
| RAdat | Methylation data from a rheumatoid arthritis study |
| RAdat2 | A simulated methylation dataset based on a real data. |
| runSOMNiBUS | Wrapper function running the smoothed-EM algorithm to... |
| splitDataByBed | Split methylation data into regions based on the genomic... |
| splitDataByChromatin | Split methylation data into regions based on the chromatin... |
| splitDataByDensity | Split methylation data into regions based on the density of... |
| splitDataByGene | Split methylation data into regions based on the genes... |
| splitDataByGRanges | Split methylation data into regions based on the genomic... |
| splitDataByRegion | Split methylation data into regions based on the spacing of... |
