tests/testthat/test-readSQLiteFile.R
In kairenchen721/interpretproteinidentification: Visually Interprets Protein Identification
test_that("reading OSW works", {
oswEdges <- c(
"AAEDFTLLVK", "AQUA4SWATH_HMLangeE", "AAGASAQVLGQEGK",
"AQUA4SWATH_Spyo", "AAPIYELVTNDQTQR", "AQUA4SWATH_HMLangeC",
"AASEIATAELAPTHPIR", "AQUA4SWATH_PombeSchmidt", "AAVPVLVHPAPR",
"AQUA4SWATH_Tuberculosis", "ADDYTYEHLR", "AQUA4SWATH_HMLangeG",
"ADHSGAVVLLK", "AQUA4SWATH_HMLangeD", "ADLPAFAELLAR",
"AQUA4SWATH_Tuberculosis", "ADLSQVADHLDHIK", "AQUA4SWATH_HMLangeC",
"ADSTGTLVITDPTR", "AQUA4SWATH_HMLangeA", "ADTLTAQELQQFK",
"AQUA4SWATH_YeastB", "AEVAALAAENK", "AQUA4SWATH_YeastB",
"AFGYYGPLR", "AQUA4SWATH_HumanEbhardt", "AFSYYGPLR",
"AQUA4SWATH_HumanEbhardt", "AGPDGTLFVVDAYK", "AQUA4SWATH_HMLangeC",
"AIAEEVPK", "AQUA4SWATH_Lepto", "AIDYVEATANSHSR",
"AQUA4SWATH_YeastB", "AITTQNVNTK", "AQUA4SWATH_MouseSabido",
"ALGYEDATQALGR", "AQUA4SWATH_HMLangeA", "ALHFYTFPK",
"AQUA4SWATH_MouseSabido", "ALLASYHR", "AQUA4SWATH_Tuberculosis",
"ALLPHLTNAIVETNK", "AQUA4SWATH_YeastA", "ANIQFGDDGTTISAVSNK",
"AQUA4SWATH_HMLangeE", "ANLGAYFNR", "AQUA4SWATH_Lepto",
"ANLIPVIAK", "AQUA4SWATH_YeastA", "APIPTALDTDSSK",
"AQUA4SWATH_HMLangeA", "APIYGTQNVYEVLDK", "AQUA4SWATH_YeastA",
"APPPGGWPLQPR", "AQUA4SWATH_HumanEbhardt", "APQALDILER",
"AQUA4SWATH_Spyo", "AQAANQQTVEAK", "AQUA4SWATH_MycoplasmaSchmidt",
"AQLTVSSER", "AQUA4SWATH_MycoplasmaSchmidt","ASPIYELVTNDQTQR",
"AQUA4SWATH_HMLangeC", "ASQTVDQNTSIYYR", "AQUA4SWATH_YeastA",
"AVDLIDEASSK", "AQUA4SWATH_Lepto", "AVTAAVESIQK",
"AQUA4SWATH_Lepto", "DAALQDVSDSEK", "AQUA4SWATH_HMLangeE",
"DATLVNEADK", "AQUA4SWATH_HMLangeB", "DAVNDITAK",
"AQUA4SWATH_HMLangeA", "DFDSLGTLR", "AQUA4SWATH_Tuberculosis",
"DFHFPSQSVSFK", "AQUA4SWATH_MycoplasmaSchmidt","DFVDASSK",
"AQUA4SWATH_HMLangeF", "DGDGSESIHVGGK", "AQUA4SWATH_HMLangeG",
"DGEAFEIDGTEDGR", "AQUA4SWATH_HMLangeC", "DHQYQFLEDAVR",
"AQUA4SWATH_MouseSabido", "DISSQEGSTDVVAR", "AQUA4SWATH_HMLangeF",
"DITAFDETLFR", "AQUA4SWATH_HMLangeA", "DITDLIDNTFIR",
"AQUA4SWATH_HMLangeF", "DITNLIDNTFIR", "AQUA4SWATH_HMLangeF",
"DLGPALADSSHDVK", "AQUA4SWATH_HMLangeA", "DLQADDTGR",
"AQUA4SWATH_HMLangeB", "DPSEYFPNK", "AQUA4SWATH_MycoplasmaSchmidt",
"DPSTALDR", "AQUA4SWATH_HMLangeA", "DQSVGDPNVDLIR",
"AQUA4SWATH_HMLangeE", "DSGDVAALR", "AQUA4SWATH_MouseSabido",
"DSSSSNVEGR", "AQUA4SWATH_HMLangeA", "DSTIEAANLAGLK",
"AQUA4SWATH_HMLangeF", "DSTIQAANLAGLK", "AQUA4SWATH_HMLangeF",
"DTNYIALASNAVR", "AQUA4SWATH_Spyo", "DYFAEVR",
"AQUA4SWATH_MouseSabido", "DYTADATSSR", "AQUA4SWATH_HMLangeC",
"EAQISSAIVSSVQSK", "AQUA4SWATH_HumanEbhardt", "EAQLLFDPVTR",
"AQUA4SWATH_Spyo", "EASGLSADSLAR", "AQUA4SWATH_HumanEbhardt",
"EASIVGEDETYPR", "AQUA4SWATH_HMLangeE", "EATIVGEDETYPR",
"AQUA4SWATH_HMLangeF", "EAVEGAVDAVK", "AQUA4SWATH_Spyo",
"EDNTGVVSQTFK", "AQUA4SWATH_HMLangeD", "EDNTGVVSQTFR",
"AQUA4SWATH_HMLangeD", "EDQTLHYDFR", "AQUA4SWATH_HMLangeD",
"EDTSDPSLVIAFGR", "AQUA4SWATH_HMLangeD", "EFLINQNILR",
"AQUA4SWATH_Lepto", "EGLPAGQAPSLLYR", "AQUA4SWATH_MouseSabido",
"EGYLANFQVLENK", "AQUA4SWATH_MycoplasmaSchmidt","EIAGVGLMEAK",
"AQUA4SWATH_MycoplasmaSchmidt","EIELEDPYEK", "AQUA4SWATH_Tuberculosis",
"EIFEEGYEDLSNK", "AQUA4SWATH_MycoplasmaSchmidt","EIFVVDGTQGK",
"AQUA4SWATH_HMLangeE", "EINLDNLGNVYSQADR", "AQUA4SWATH_MycoplasmaSchmidt",
"ELASGLSFPVGFK", "AQUA4SWATH_YeastB", "ELGQSGVDTYLQTK",
"AQUA4SWATH_YeastB", "ELSAHGIR", "AQUA4SWATH_Tuberculosis",
"ELSEYDATAIK", "AQUA4SWATH_HMLangeD", "EPVQLETLSIR",
"AQUA4SWATH_HumanEbhardt", "ESAPVDVTDR", "AQUA4SWATH_Tuberculosis",
"ESDIIAIVTK", "AQUA4SWATH_Spyo", "ESDILAVVK",
"AQUA4SWATH_Lepto", "EVAQNNGQILFVGTK", "AQUA4SWATH_MycoplasmaSchmidt",
"EVSSATNALR", "AQUA4SWATH_HumanEbhardt", "EYTEGVNGQPSIR",
"AQUA4SWATH_YeastB", "FATSDLNDLYR", "AQUA4SWATH_Lepto",
"FDTHEYHDESR", "AQUA4SWATH_HMLangeB", "FGHFTGFDSSTLK",
"AQUA4SWATH_HMLangeF", "FGTEIITETVSK", "AQUA4SWATH_PombeSchmidt",
"FIDSTFLEQK", "AQUA4SWATH_HMLangeA", "FINYDQTVSR",
"AQUA4SWATH_HMLangeB", "FLDDTYK", "AQUA4SWATH_HMLangeB",
"FLEPYDDSIQAQK", "AQUA4SWATH_HMLangeB", "FPSPVSHADDLYGK",
"AQUA4SWATH_PombeSchmidt", "FSGADDTDFR", "AQUA4SWATH_HMLangeE",
"FSGVDDTDFR", "AQUA4SWATH_HMLangeE", "FSQAGSEVSALLGR",
"AQUA4SWATH_Lepto", "FSTEEEVDYVVK", "AQUA4SWATH_YeastB",
"FVDSTGYLTEAEK", "AQUA4SWATH_HMLangeF", "FWLVEGDSSR",
"AQUA4SWATH_HMLangeB", "GAFVDAHLLK", "AQUA4SWATH_MycoplasmaSchmidt",
"GAIAAAHYIR", "AQUA4SWATH_YeastB", "GAQEDGTGQATSR",
"AQUA4SWATH_HMLangeC", "GDETIVNLIHSTR", "AQUA4SWATH_HMLangeA",
"GDLAQILQLTR", "AQUA4SWATH_YeastA", "GDLFTQQQLEVLDR",
"AQUA4SWATH_MouseSabido", "GDSSLLLAVTEVK", "AQUA4SWATH_HMLangeB",
"GDVQAVAYEEPK", "AQUA4SWATH_MouseSabido", "GENIPEPGIPESFK",
"AQUA4SWATH_Tuberculosis", "GFAFVQYVNER", "AQUA4SWATH_HumanEbhardt",
"GFDATYHVR", "AQUA4SWATH_HMLangeE", "GFDVTLVTSTNK",
"AQUA4SWATH_MycoplasmaSchmidt","GFTPDGPAGTEPNIAPGYK", "AQUA4SWATH_Lepto",
"GGNFGFGDSR", "AQUA4SWATH_HumanEbhardt", "GHFYYDISDVR",
"AQUA4SWATH_HMLangeG", "GHTLTLDFTR", "AQUA4SWATH_HMLangeD",
"GIAASDGVAVAK", "AQUA4SWATH_Spyo", "GIADLSNFIR",
"AQUA4SWATH_HMLangeB", "GIGDWSDSK", "AQUA4SWATH_HMLangeF",
"GILFVGSGVSGGEEGAR", "AQUA4SWATH_YeastB", "GISNEGQNASIK",
"AQUA4SWATH_YeastB", "GITLTNEEFK", "AQUA4SWATH_Spyo",
"GLPITITESDIR", "AQUA4SWATH_HumanEbhardt", "GLSIEQLTTLAEK",
"AQUA4SWATH_MouseSabido", "GLSPGDYSVR", "AQUA4SWATH_HMLangeD",
"GLVTAVGDEGGFAPK", "AQUA4SWATH_Spyo", "GMGDVVAVTGDGTNDAPALK",
"AQUA4SWATH_YeastB", "GSDYSEILDK", "AQUA4SWATH_HMLangeA",
"GSIYHEVIGR", "AQUA4SWATH_MycoplasmaSchmidt","GSMADVPK",
"AQUA4SWATH_YeastB", "GSPADVTEAR", "AQUA4SWATH_HMLangeE",
"GSVNLSLPATLIK", "AQUA4SWATH_PombeSchmidt", "GTAVVNGAFEEIK",
"AQUA4SWATH_PombeSchmidt", "GTLDTVGVEK", "AQUA4SWATH_MycoplasmaSchmidt",
"GTLGLTVAEPIK", "AQUA4SWATH_Tuberculosis", "GVAVTDTSQLGFR",
"AQUA4SWATH_HMLangeE", "GVFITDETGQPLIGK", "AQUA4SWATH_HMLangeD",
"GVGIISEGDETVEDIAAR", "AQUA4SWATH_HMLangeC", "GVTEETTTGVLR",
"AQUA4SWATH_Tuberculosis", "GVVDSDDLPLDVSR", "AQUA4SWATH_HMLangeA",
"HAEILSEK", "AQUA4SWATH_YeastA", "HDWDSFFR",
"AQUA4SWATH_HumanEbhardt", "HFDTSLVFPR", "AQUA4SWATH_HMLangeG",
"HFISELEK", "AQUA4SWATH_YeastB", "HGVAAITTTK",
"AQUA4SWATH_YeastA", "HGVITSADVR", "AQUA4SWATH_Tuberculosis",
"HIEVDGSK", "AQUA4SWATH_HMLangeD", "HLDSSHPR",
"AQUA4SWATH_HMLangeF", "HLSEIGAWR", "AQUA4SWATH_MycoplasmaSchmidt",
"HNDLEAYR", "AQUA4SWATH_MycoplasmaSchmidt","HQDQTLR",
"AQUA4SWATH_HMLangeA", "HVDYITEK", "AQUA4SWATH_MouseSabido",
"HVSVDVFGR", "AQUA4SWATH_MouseSabido", "IADIQLEGLR",
"AQUA4SWATH_Lepto", "IAEVFEELTGSK", "AQUA4SWATH_Lepto",
"IAGFDSIFK", "AQUA4SWATH_MouseSabido", "IALTTTMGPSLK",
"AQUA4SWATH_MycoplasmaSchmidt","IASADALSEFLK", "AQUA4SWATH_PombeSchmidt",
"IDDLTGELSTSER", "AQUA4SWATH_HMLangeB", "IDGSFETEPVK",
"AQUA4SWATH_MycoplasmaSchmidt","IDSSLQLPDR", "AQUA4SWATH_HMLangeF",
"IDSSVTDVEEIIGVR", "AQUA4SWATH_HMLangeB", "IDTPGEADYYR",
"AQUA4SWATH_Tuberculosis", "IDTTSDEK", "AQUA4SWATH_HMLangeB",
"IFLWGPVTDESSK", "AQUA4SWATH_Lepto", "IFNIDSGDGSIFTSK",
"AQUA4SWATH_HMLangeC", "IGAPYLEK", "AQUA4SWATH_MycoplasmaSchmidt",
"IGAVVAPHYSPTLSIR", "AQUA4SWATH_PombeSchmidt", "IGVISVVEGGDDALAK",
"AQUA4SWATH_Spyo", "IHNEDYELAR", "AQUA4SWATH_PombeSchmidt",
"IIAADNSGTFK", "AQUA4SWATH_HMLangeB", "IIFADVSVR",
"AQUA4SWATH_HMLangeF", "IINEPTAAAIAYGLDAK", "AQUA4SWATH_PombeSchmidt",
"IISDFEEDLEK", "AQUA4SWATH_Lepto", "ILDETLYENAK",
"AQUA4SWATH_HMLangeG", "INPSQQLQQQLNR", "AQUA4SWATH_YeastA",
"IPFDLSEWQK", "AQUA4SWATH_HMLangeE", "IPVDSIYSPVLK",
"AQUA4SWATH_Tuberculosis", "IPVGVTLR", "AQUA4SWATH_MycoplasmaSchmidt",
"IQDFDYTDHTLGR", "AQUA4SWATH_HMLangeD", "IQTSDVTNK",
"AQUA4SWATH_HMLangeA", "ITVDDSDQGANAK", "AQUA4SWATH_HMLangeB",
"IVDVDLTSEGK", "AQUA4SWATH_HMLangeB", "IVEIYGPESSGK",
"AQUA4SWATH_Lepto", "IVTEAVEIEQR", "AQUA4SWATH_YeastB",
"IYFHTDAAQAYGK", "AQUA4SWATH_YeastA", "LADNTHQHVFDDLR",
"AQUA4SWATH_HMLangeF", "LAFEPPPPR", "AQUA4SWATH_MouseSabido",
"LAWEGDETVTTR", "AQUA4SWATH_HMLangeB", "LDASLPALLLIR",
"AQUA4SWATH_HMLangeC", "LDDLAAALPR", "AQUA4SWATH_Tuberculosis",
"LDGSITSPGWPK", "AQUA4SWATH_HMLangeB", "LDLSEGEVAATVK",
"AQUA4SWATH_HMLangeB", "LEDITTGTYTIHAQK", "AQUA4SWATH_HMLangeE",
"LEDNTDLEDISHNYR", "AQUA4SWATH_YeastA", "LEDSTAPIR",
"AQUA4SWATH_HMLangeA", "LELNGNDITR", "AQUA4SWATH_HMLangeB",
"LFAPEVQKPVK", "AQUA4SWATH_Spyo", "LFIGGLNTETNEK",
"AQUA4SWATH_HumanEbhardt", "LGAIDSTLSDESK", "AQUA4SWATH_HMLangeD",
"LGAIDSTLSDQSK", "AQUA4SWATH_HMLangeD", "LGANFEQIPVNSPK",
"AQUA4SWATH_PombeSchmidt", "LGAVADTTELK", "AQUA4SWATH_PombeSchmidt",
"LGGWDITGPWAK", "AQUA4SWATH_HMLangeB", "LGQHLATEPLGTNSWER",
"AQUA4SWATH_HumanEbhardt", "LHEISDETFR", "AQUA4SWATH_HMLangeB",
"LIDALESDDDVQK", "AQUA4SWATH_Spyo", "LITVEGPDGAGK",
"AQUA4SWATH_Spyo", "LLDLTSPEATAK", "AQUA4SWATH_HMLangeD",
"LLPAFDTTSGLPYPR", "AQUA4SWATH_HMLangeD", "LNTIYQNDLTK",
"AQUA4SWATH_HMLangeA", "LPPGFEIVQALSK", "AQUA4SWATH_YeastA",
"LPSEEIALDLISK", "AQUA4SWATH_PombeSchmidt", "LSITDETFR",
"AQUA4SWATH_HMLangeF", "LTDVEAQVLDQTTR", "AQUA4SWATH_HMLangeC",
"LTDVTFPTGQVSSFR", "AQUA4SWATH_HMLangeE", "LTHEVADAIEK",
"AQUA4SWATH_PombeSchmidt", "LTILEELR", "AQUA4SWATH_YeastB",
"LTLVEAADLVK", "AQUA4SWATH_Lepto", "LTNVVFDTGGSK",
"AQUA4SWATH_MycoplasmaSchmidt","LTPLLTPPSDLTAEELK", "AQUA4SWATH_YeastB",
"LTYESGFLDYSK", "AQUA4SWATH_HMLangeG", "LVDEEGNDVTPEK",
"AQUA4SWATH_Spyo", "LVDLNANTVEAALK", "AQUA4SWATH_MycoplasmaSchmidt",
"LVDSTFLHNK", "AQUA4SWATH_HMLangeF", "LVEDPQVIAPFLGK",
"AQUA4SWATH_YeastB", "LWDSTFLEEYSK", "AQUA4SWATH_HMLangeD",
"LWGATIGDQSMELR", "AQUA4SWATH_YeastB", "MDVSGQETDWR",
"AQUA4SWATH_MouseSabido", "MIVDPVEPHGEMK", "AQUA4SWATH_MouseSabido",
"NAAEIQDFPFDK", "AQUA4SWATH_Spyo", "NDDLELALK",
"AQUA4SWATH_MycoplasmaSchmidt","NDHTASILDR", "AQUA4SWATH_HMLangeC",
"NDVTEIQGIPGAASGLIK", "AQUA4SWATH_HMLangeB", "NFPDAFEYNDVSR",
"AQUA4SWATH_HMLangeC", "NPDGTVTVISR", "AQUA4SWATH_HMLangeE",
"NSDVTINTLK", "AQUA4SWATH_HMLangeE", "NTDFNGVNNIHQK",
"AQUA4SWATH_YeastA", "NTDSSNDLTR", "AQUA4SWATH_HMLangeD",
"NTEITISGISK", "AQUA4SWATH_MycoplasmaSchmidt","NYGVTFPVLAK",
"AQUA4SWATH_PombeSchmidt", "QAQELADLTK", "AQUA4SWATH_Spyo",
"QEPAAPSLSPAVSAK", "AQUA4SWATH_MouseSabido", "QNLESDLTNLIK",
"AQUA4SWATH_HMLangeE", "SDESVSEPR", "AQUA4SWATH_HMLangeF",
"SDLGVHLR", "AQUA4SWATH_MouseSabido", "SDNLSQHIK",
"AQUA4SWATH_YeastA", "SDSSDTPPLPSPPGK", "AQUA4SWATH_HMLangeC",
"SDSYVELSQYR", "AQUA4SWATH_HumanEbhardt", "SEFAYGSFVR",
"AQUA4SWATH_Tuberculosis", "SFANAGLSITEINEK", "AQUA4SWATH_MycoplasmaSchmidt",
"SGEGEVSGLLR", "AQUA4SWATH_MouseSabido", "SGIHTLQELLSK",
"AQUA4SWATH_MycoplasmaSchmidt","SGTTEPDAGLTER", "AQUA4SWATH_Tuberculosis",
"SGVISGGASDLK", "AQUA4SWATH_MouseSabido", "SIDVTGQGFSLIQK",
"AQUA4SWATH_HMLangeB", "SNSYFFQNPPK", "AQUA4SWATH_PombeSchmidt",
"SQFVVSSDSSK", "AQUA4SWATH_HMLangeF", "SSGPTSLFAVTVAPPGAR",
"AQUA4SWATH_HumanEbhardt", "SSSESGFYDAESLK", "AQUA4SWATH_YeastA",
"STVDQIHNEMTVLER", "AQUA4SWATH_PombeSchmidt", "SVLEDTTSYEEAK",
"AQUA4SWATH_HMLangeA", "SWATGSPDSSNR", "AQUA4SWATH_HMLangeA",
"SYGAQVDVVRPLK", "AQUA4SWATH_YeastA", "TALFEEISR",
"AQUA4SWATH_MouseSabido", "TASVSIDQTEPPK", "AQUA4SWATH_HMLangeB",
"TDSTQVSDVR", "AQUA4SWATH_HMLangeB", "TEVITHANLVR",
"AQUA4SWATH_Lepto", "TFADGSLAFR", "AQUA4SWATH_HMLangeC",
"TFDLGEVGR", "AQUA4SWATH_Lepto", "TGAPVYSTFYIFR",
"AQUA4SWATH_YeastA", "TGDGSDVTSDFTK", "AQUA4SWATH_HMLangeB",
"TGGDEFDEAIIK", "AQUA4SWATH_Lepto", "TGQLDELEK",
"AQUA4SWATH_MouseSabido", "TIVGVSEDFAALR", "AQUA4SWATH_Tuberculosis",
"TIVIHAGEDDLGK", "AQUA4SWATH_PombeSchmidt", "TPAEAIYGEYVDK",
"AQUA4SWATH_PombeSchmidt", "TPAHILHPQK", "AQUA4SWATH_MycoplasmaSchmidt",
"TPEVSFLPEEATEEAGVR", "AQUA4SWATH_HumanEbhardt", "TPGDFTFENAEK",
"AQUA4SWATH_PombeSchmidt", "TSDTGEEEAITDSTEANGK", "AQUA4SWATH_HMLangeC",
"TSIALDTILNQK", "AQUA4SWATH_Lepto", "TTDASASDPR",
"AQUA4SWATH_HMLangeF", "TTEEFSIR", "AQUA4SWATH_Tuberculosis",
"TVADVDSLLR", "AQUA4SWATH_Tuberculosis", "TVLAQVNNPFIVPLK",
"AQUA4SWATH_PombeSchmidt", "TVLPDPVFNNTLVTR", "AQUA4SWATH_MycoplasmaSchmidt",
"TYDGTNSDAASR", "AQUA4SWATH_HMLangeG", "TYEDGSSVEYR",
"AQUA4SWATH_HMLangeG", "TYVEVVHQSVAPDSTQK", "AQUA4SWATH_HMLangeE",
"TYVEVVHQSVAQDSTQK", "AQUA4SWATH_HMLangeE", "VAAQELANADK",
"AQUA4SWATH_Spyo", "VAGDQTSAVLR", "AQUA4SWATH_HMLangeA",
"VAQLEQVYIR", "AQUA4SWATH_HumanEbhardt", "VATAVFNNPAGLDK",
"AQUA4SWATH_Lepto", "VDITYNYPVR", "AQUA4SWATH_HMLangeF",
"VDLSAPLLPK", "AQUA4SWATH_HMLangeG", "VDPGQVISVR",
"AQUA4SWATH_Spyo", "VESPVLPPVLVPK", "AQUA4SWATH_MouseSabido",
"VGDTVLYGK", "AQUA4SWATH_Lepto", "VGEPVALSEEER",
"AQUA4SWATH_HumanEbhardt", "VGGHAFVIDGADGR", "AQUA4SWATH_Spyo",
"VGGPADFLAFPR", "AQUA4SWATH_Spyo", "VHLVQSNHNR",
"AQUA4SWATH_PombeSchmidt", "VHQLLPLPK", "AQUA4SWATH_MouseSabido",
"VIEEFYDQTWNHR", "AQUA4SWATH_HMLangeF", "VIVGGSSEYK",
"AQUA4SWATH_MouseSabido", "VLDQLLLPYTTK", "AQUA4SWATH_YeastA",
"VNIQGDGTLSASQK", "AQUA4SWATH_HMLangeB", "VNPETGIIDYDTLEK",
"AQUA4SWATH_YeastA", "VNSMMETMTGK", "AQUA4SWATH_PombeSchmidt",
"VSALLEALPK", "AQUA4SWATH_Tuberculosis", "VSANVQDVTTEDVEK",
"AQUA4SWATH_HMLangeE", "VSPTDIEEGMR", "AQUA4SWATH_YeastB",
"VSSGINPDIELNR", "AQUA4SWATH_Tuberculosis", "VTGPVVDVEFPR",
"AQUA4SWATH_Tuberculosis", "VVDGEEVTEYTTK", "AQUA4SWATH_Spyo",
"VVLTGTDAENIVR", "AQUA4SWATH_Spyo", "VYVYALDQTR",
"AQUA4SWATH_HMLangeD", "VYVYAVDQTR", "AQUA4SWATH_HMLangeA",
"WQDDTGPSDK", "AQUA4SWATH_HMLangeE", "WSYVAYDESDK",
"AQUA4SWATH_HMLangeE", "WTGHDVTVVQR", "AQUA4SWATH_HMLangeB",
"WVSLDDWTYSK", "AQUA4SWATH_HMLangeE", "YAVYWDSSNPR",
"AQUA4SWATH_HMLangeB", "YFNDGDIVEGTIVK", "AQUA4SWATH_Tuberculosis",
"YGEDDSLSVEGFR", "AQUA4SWATH_HMLangeF", "YGGHSMSDPGTTYR",
"AQUA4SWATH_YeastB", "YGPLSGVNVVYDQR", "AQUA4SWATH_HumanEbhardt",
"YPDHYEVER", "AQUA4SWATH_Tuberculosis", "YSQAADSTK",
"AQUA4SWATH_HMLangeB", "YTDLNSNDVTGLR", "AQUA4SWATH_HumanEbhardt",
"YTIGPILDPETK", "AQUA4SWATH_MycoplasmaSchmidt","YTSDPDVTSVGPSK",
"AQUA4SWATH_HMLangeA", "YVILQLLSGETR", "AQUA4SWATH_MycoplasmaSchmidt",
"YVPIHTIDDGYSVIK", "AQUA4SWATH_YeastB", "YVQDGTYTAK",
"AQUA4SWATH_HMLangeD", "YYDYTLSINGK", "AQUA4SWATH_HMLangeD"
)
dbPath <- system.file("extdata", "test_data.osw", package = "interpretproteinidentification")
expect_equal(readSQLiteFile(dbPath), oswEdges)
})
kairenchen721/interpretproteinidentification documentation built on Dec. 21, 2021, 5:15 a.m.
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test_that("reading OSW works", {
oswEdges <- c(
"AAEDFTLLVK", "AQUA4SWATH_HMLangeE", "AAGASAQVLGQEGK",
"AQUA4SWATH_Spyo", "AAPIYELVTNDQTQR", "AQUA4SWATH_HMLangeC",
"AASEIATAELAPTHPIR", "AQUA4SWATH_PombeSchmidt", "AAVPVLVHPAPR",
"AQUA4SWATH_Tuberculosis", "ADDYTYEHLR", "AQUA4SWATH_HMLangeG",
"ADHSGAVVLLK", "AQUA4SWATH_HMLangeD", "ADLPAFAELLAR",
"AQUA4SWATH_Tuberculosis", "ADLSQVADHLDHIK", "AQUA4SWATH_HMLangeC",
"ADSTGTLVITDPTR", "AQUA4SWATH_HMLangeA", "ADTLTAQELQQFK",
"AQUA4SWATH_YeastB", "AEVAALAAENK", "AQUA4SWATH_YeastB",
"AFGYYGPLR", "AQUA4SWATH_HumanEbhardt", "AFSYYGPLR",
"AQUA4SWATH_HumanEbhardt", "AGPDGTLFVVDAYK", "AQUA4SWATH_HMLangeC",
"AIAEEVPK", "AQUA4SWATH_Lepto", "AIDYVEATANSHSR",
"AQUA4SWATH_YeastB", "AITTQNVNTK", "AQUA4SWATH_MouseSabido",
"ALGYEDATQALGR", "AQUA4SWATH_HMLangeA", "ALHFYTFPK",
"AQUA4SWATH_MouseSabido", "ALLASYHR", "AQUA4SWATH_Tuberculosis",
"ALLPHLTNAIVETNK", "AQUA4SWATH_YeastA", "ANIQFGDDGTTISAVSNK",
"AQUA4SWATH_HMLangeE", "ANLGAYFNR", "AQUA4SWATH_Lepto",
"ANLIPVIAK", "AQUA4SWATH_YeastA", "APIPTALDTDSSK",
"AQUA4SWATH_HMLangeA", "APIYGTQNVYEVLDK", "AQUA4SWATH_YeastA",
"APPPGGWPLQPR", "AQUA4SWATH_HumanEbhardt", "APQALDILER",
"AQUA4SWATH_Spyo", "AQAANQQTVEAK", "AQUA4SWATH_MycoplasmaSchmidt",
"AQLTVSSER", "AQUA4SWATH_MycoplasmaSchmidt","ASPIYELVTNDQTQR",
"AQUA4SWATH_HMLangeC", "ASQTVDQNTSIYYR", "AQUA4SWATH_YeastA",
"AVDLIDEASSK", "AQUA4SWATH_Lepto", "AVTAAVESIQK",
"AQUA4SWATH_Lepto", "DAALQDVSDSEK", "AQUA4SWATH_HMLangeE",
"DATLVNEADK", "AQUA4SWATH_HMLangeB", "DAVNDITAK",
"AQUA4SWATH_HMLangeA", "DFDSLGTLR", "AQUA4SWATH_Tuberculosis",
"DFHFPSQSVSFK", "AQUA4SWATH_MycoplasmaSchmidt","DFVDASSK",
"AQUA4SWATH_HMLangeF", "DGDGSESIHVGGK", "AQUA4SWATH_HMLangeG",
"DGEAFEIDGTEDGR", "AQUA4SWATH_HMLangeC", "DHQYQFLEDAVR",
"AQUA4SWATH_MouseSabido", "DISSQEGSTDVVAR", "AQUA4SWATH_HMLangeF",
"DITAFDETLFR", "AQUA4SWATH_HMLangeA", "DITDLIDNTFIR",
"AQUA4SWATH_HMLangeF", "DITNLIDNTFIR", "AQUA4SWATH_HMLangeF",
"DLGPALADSSHDVK", "AQUA4SWATH_HMLangeA", "DLQADDTGR",
"AQUA4SWATH_HMLangeB", "DPSEYFPNK", "AQUA4SWATH_MycoplasmaSchmidt",
"DPSTALDR", "AQUA4SWATH_HMLangeA", "DQSVGDPNVDLIR",
"AQUA4SWATH_HMLangeE", "DSGDVAALR", "AQUA4SWATH_MouseSabido",
"DSSSSNVEGR", "AQUA4SWATH_HMLangeA", "DSTIEAANLAGLK",
"AQUA4SWATH_HMLangeF", "DSTIQAANLAGLK", "AQUA4SWATH_HMLangeF",
"DTNYIALASNAVR", "AQUA4SWATH_Spyo", "DYFAEVR",
"AQUA4SWATH_MouseSabido", "DYTADATSSR", "AQUA4SWATH_HMLangeC",
"EAQISSAIVSSVQSK", "AQUA4SWATH_HumanEbhardt", "EAQLLFDPVTR",
"AQUA4SWATH_Spyo", "EASGLSADSLAR", "AQUA4SWATH_HumanEbhardt",
"EASIVGEDETYPR", "AQUA4SWATH_HMLangeE", "EATIVGEDETYPR",
"AQUA4SWATH_HMLangeF", "EAVEGAVDAVK", "AQUA4SWATH_Spyo",
"EDNTGVVSQTFK", "AQUA4SWATH_HMLangeD", "EDNTGVVSQTFR",
"AQUA4SWATH_HMLangeD", "EDQTLHYDFR", "AQUA4SWATH_HMLangeD",
"EDTSDPSLVIAFGR", "AQUA4SWATH_HMLangeD", "EFLINQNILR",
"AQUA4SWATH_Lepto", "EGLPAGQAPSLLYR", "AQUA4SWATH_MouseSabido",
"EGYLANFQVLENK", "AQUA4SWATH_MycoplasmaSchmidt","EIAGVGLMEAK",
"AQUA4SWATH_MycoplasmaSchmidt","EIELEDPYEK", "AQUA4SWATH_Tuberculosis",
"EIFEEGYEDLSNK", "AQUA4SWATH_MycoplasmaSchmidt","EIFVVDGTQGK",
"AQUA4SWATH_HMLangeE", "EINLDNLGNVYSQADR", "AQUA4SWATH_MycoplasmaSchmidt",
"ELASGLSFPVGFK", "AQUA4SWATH_YeastB", "ELGQSGVDTYLQTK",
"AQUA4SWATH_YeastB", "ELSAHGIR", "AQUA4SWATH_Tuberculosis",
"ELSEYDATAIK", "AQUA4SWATH_HMLangeD", "EPVQLETLSIR",
"AQUA4SWATH_HumanEbhardt", "ESAPVDVTDR", "AQUA4SWATH_Tuberculosis",
"ESDIIAIVTK", "AQUA4SWATH_Spyo", "ESDILAVVK",
"AQUA4SWATH_Lepto", "EVAQNNGQILFVGTK", "AQUA4SWATH_MycoplasmaSchmidt",
"EVSSATNALR", "AQUA4SWATH_HumanEbhardt", "EYTEGVNGQPSIR",
"AQUA4SWATH_YeastB", "FATSDLNDLYR", "AQUA4SWATH_Lepto",
"FDTHEYHDESR", "AQUA4SWATH_HMLangeB", "FGHFTGFDSSTLK",
"AQUA4SWATH_HMLangeF", "FGTEIITETVSK", "AQUA4SWATH_PombeSchmidt",
"FIDSTFLEQK", "AQUA4SWATH_HMLangeA", "FINYDQTVSR",
"AQUA4SWATH_HMLangeB", "FLDDTYK", "AQUA4SWATH_HMLangeB",
"FLEPYDDSIQAQK", "AQUA4SWATH_HMLangeB", "FPSPVSHADDLYGK",
"AQUA4SWATH_PombeSchmidt", "FSGADDTDFR", "AQUA4SWATH_HMLangeE",
"FSGVDDTDFR", "AQUA4SWATH_HMLangeE", "FSQAGSEVSALLGR",
"AQUA4SWATH_Lepto", "FSTEEEVDYVVK", "AQUA4SWATH_YeastB",
"FVDSTGYLTEAEK", "AQUA4SWATH_HMLangeF", "FWLVEGDSSR",
"AQUA4SWATH_HMLangeB", "GAFVDAHLLK", "AQUA4SWATH_MycoplasmaSchmidt",
"GAIAAAHYIR", "AQUA4SWATH_YeastB", "GAQEDGTGQATSR",
"AQUA4SWATH_HMLangeC", "GDETIVNLIHSTR", "AQUA4SWATH_HMLangeA",
"GDLAQILQLTR", "AQUA4SWATH_YeastA", "GDLFTQQQLEVLDR",
"AQUA4SWATH_MouseSabido", "GDSSLLLAVTEVK", "AQUA4SWATH_HMLangeB",
"GDVQAVAYEEPK", "AQUA4SWATH_MouseSabido", "GENIPEPGIPESFK",
"AQUA4SWATH_Tuberculosis", "GFAFVQYVNER", "AQUA4SWATH_HumanEbhardt",
"GFDATYHVR", "AQUA4SWATH_HMLangeE", "GFDVTLVTSTNK",
"AQUA4SWATH_MycoplasmaSchmidt","GFTPDGPAGTEPNIAPGYK", "AQUA4SWATH_Lepto",
"GGNFGFGDSR", "AQUA4SWATH_HumanEbhardt", "GHFYYDISDVR",
"AQUA4SWATH_HMLangeG", "GHTLTLDFTR", "AQUA4SWATH_HMLangeD",
"GIAASDGVAVAK", "AQUA4SWATH_Spyo", "GIADLSNFIR",
"AQUA4SWATH_HMLangeB", "GIGDWSDSK", "AQUA4SWATH_HMLangeF",
"GILFVGSGVSGGEEGAR", "AQUA4SWATH_YeastB", "GISNEGQNASIK",
"AQUA4SWATH_YeastB", "GITLTNEEFK", "AQUA4SWATH_Spyo",
"GLPITITESDIR", "AQUA4SWATH_HumanEbhardt", "GLSIEQLTTLAEK",
"AQUA4SWATH_MouseSabido", "GLSPGDYSVR", "AQUA4SWATH_HMLangeD",
"GLVTAVGDEGGFAPK", "AQUA4SWATH_Spyo", "GMGDVVAVTGDGTNDAPALK",
"AQUA4SWATH_YeastB", "GSDYSEILDK", "AQUA4SWATH_HMLangeA",
"GSIYHEVIGR", "AQUA4SWATH_MycoplasmaSchmidt","GSMADVPK",
"AQUA4SWATH_YeastB", "GSPADVTEAR", "AQUA4SWATH_HMLangeE",
"GSVNLSLPATLIK", "AQUA4SWATH_PombeSchmidt", "GTAVVNGAFEEIK",
"AQUA4SWATH_PombeSchmidt", "GTLDTVGVEK", "AQUA4SWATH_MycoplasmaSchmidt",
"GTLGLTVAEPIK", "AQUA4SWATH_Tuberculosis", "GVAVTDTSQLGFR",
"AQUA4SWATH_HMLangeE", "GVFITDETGQPLIGK", "AQUA4SWATH_HMLangeD",
"GVGIISEGDETVEDIAAR", "AQUA4SWATH_HMLangeC", "GVTEETTTGVLR",
"AQUA4SWATH_Tuberculosis", "GVVDSDDLPLDVSR", "AQUA4SWATH_HMLangeA",
"HAEILSEK", "AQUA4SWATH_YeastA", "HDWDSFFR",
"AQUA4SWATH_HumanEbhardt", "HFDTSLVFPR", "AQUA4SWATH_HMLangeG",
"HFISELEK", "AQUA4SWATH_YeastB", "HGVAAITTTK",
"AQUA4SWATH_YeastA", "HGVITSADVR", "AQUA4SWATH_Tuberculosis",
"HIEVDGSK", "AQUA4SWATH_HMLangeD", "HLDSSHPR",
"AQUA4SWATH_HMLangeF", "HLSEIGAWR", "AQUA4SWATH_MycoplasmaSchmidt",
"HNDLEAYR", "AQUA4SWATH_MycoplasmaSchmidt","HQDQTLR",
"AQUA4SWATH_HMLangeA", "HVDYITEK", "AQUA4SWATH_MouseSabido",
"HVSVDVFGR", "AQUA4SWATH_MouseSabido", "IADIQLEGLR",
"AQUA4SWATH_Lepto", "IAEVFEELTGSK", "AQUA4SWATH_Lepto",
"IAGFDSIFK", "AQUA4SWATH_MouseSabido", "IALTTTMGPSLK",
"AQUA4SWATH_MycoplasmaSchmidt","IASADALSEFLK", "AQUA4SWATH_PombeSchmidt",
"IDDLTGELSTSER", "AQUA4SWATH_HMLangeB", "IDGSFETEPVK",
"AQUA4SWATH_MycoplasmaSchmidt","IDSSLQLPDR", "AQUA4SWATH_HMLangeF",
"IDSSVTDVEEIIGVR", "AQUA4SWATH_HMLangeB", "IDTPGEADYYR",
"AQUA4SWATH_Tuberculosis", "IDTTSDEK", "AQUA4SWATH_HMLangeB",
"IFLWGPVTDESSK", "AQUA4SWATH_Lepto", "IFNIDSGDGSIFTSK",
"AQUA4SWATH_HMLangeC", "IGAPYLEK", "AQUA4SWATH_MycoplasmaSchmidt",
"IGAVVAPHYSPTLSIR", "AQUA4SWATH_PombeSchmidt", "IGVISVVEGGDDALAK",
"AQUA4SWATH_Spyo", "IHNEDYELAR", "AQUA4SWATH_PombeSchmidt",
"IIAADNSGTFK", "AQUA4SWATH_HMLangeB", "IIFADVSVR",
"AQUA4SWATH_HMLangeF", "IINEPTAAAIAYGLDAK", "AQUA4SWATH_PombeSchmidt",
"IISDFEEDLEK", "AQUA4SWATH_Lepto", "ILDETLYENAK",
"AQUA4SWATH_HMLangeG", "INPSQQLQQQLNR", "AQUA4SWATH_YeastA",
"IPFDLSEWQK", "AQUA4SWATH_HMLangeE", "IPVDSIYSPVLK",
"AQUA4SWATH_Tuberculosis", "IPVGVTLR", "AQUA4SWATH_MycoplasmaSchmidt",
"IQDFDYTDHTLGR", "AQUA4SWATH_HMLangeD", "IQTSDVTNK",
"AQUA4SWATH_HMLangeA", "ITVDDSDQGANAK", "AQUA4SWATH_HMLangeB",
"IVDVDLTSEGK", "AQUA4SWATH_HMLangeB", "IVEIYGPESSGK",
"AQUA4SWATH_Lepto", "IVTEAVEIEQR", "AQUA4SWATH_YeastB",
"IYFHTDAAQAYGK", "AQUA4SWATH_YeastA", "LADNTHQHVFDDLR",
"AQUA4SWATH_HMLangeF", "LAFEPPPPR", "AQUA4SWATH_MouseSabido",
"LAWEGDETVTTR", "AQUA4SWATH_HMLangeB", "LDASLPALLLIR",
"AQUA4SWATH_HMLangeC", "LDDLAAALPR", "AQUA4SWATH_Tuberculosis",
"LDGSITSPGWPK", "AQUA4SWATH_HMLangeB", "LDLSEGEVAATVK",
"AQUA4SWATH_HMLangeB", "LEDITTGTYTIHAQK", "AQUA4SWATH_HMLangeE",
"LEDNTDLEDISHNYR", "AQUA4SWATH_YeastA", "LEDSTAPIR",
"AQUA4SWATH_HMLangeA", "LELNGNDITR", "AQUA4SWATH_HMLangeB",
"LFAPEVQKPVK", "AQUA4SWATH_Spyo", "LFIGGLNTETNEK",
"AQUA4SWATH_HumanEbhardt", "LGAIDSTLSDESK", "AQUA4SWATH_HMLangeD",
"LGAIDSTLSDQSK", "AQUA4SWATH_HMLangeD", "LGANFEQIPVNSPK",
"AQUA4SWATH_PombeSchmidt", "LGAVADTTELK", "AQUA4SWATH_PombeSchmidt",
"LGGWDITGPWAK", "AQUA4SWATH_HMLangeB", "LGQHLATEPLGTNSWER",
"AQUA4SWATH_HumanEbhardt", "LHEISDETFR", "AQUA4SWATH_HMLangeB",
"LIDALESDDDVQK", "AQUA4SWATH_Spyo", "LITVEGPDGAGK",
"AQUA4SWATH_Spyo", "LLDLTSPEATAK", "AQUA4SWATH_HMLangeD",
"LLPAFDTTSGLPYPR", "AQUA4SWATH_HMLangeD", "LNTIYQNDLTK",
"AQUA4SWATH_HMLangeA", "LPPGFEIVQALSK", "AQUA4SWATH_YeastA",
"LPSEEIALDLISK", "AQUA4SWATH_PombeSchmidt", "LSITDETFR",
"AQUA4SWATH_HMLangeF", "LTDVEAQVLDQTTR", "AQUA4SWATH_HMLangeC",
"LTDVTFPTGQVSSFR", "AQUA4SWATH_HMLangeE", "LTHEVADAIEK",
"AQUA4SWATH_PombeSchmidt", "LTILEELR", "AQUA4SWATH_YeastB",
"LTLVEAADLVK", "AQUA4SWATH_Lepto", "LTNVVFDTGGSK",
"AQUA4SWATH_MycoplasmaSchmidt","LTPLLTPPSDLTAEELK", "AQUA4SWATH_YeastB",
"LTYESGFLDYSK", "AQUA4SWATH_HMLangeG", "LVDEEGNDVTPEK",
"AQUA4SWATH_Spyo", "LVDLNANTVEAALK", "AQUA4SWATH_MycoplasmaSchmidt",
"LVDSTFLHNK", "AQUA4SWATH_HMLangeF", "LVEDPQVIAPFLGK",
"AQUA4SWATH_YeastB", "LWDSTFLEEYSK", "AQUA4SWATH_HMLangeD",
"LWGATIGDQSMELR", "AQUA4SWATH_YeastB", "MDVSGQETDWR",
"AQUA4SWATH_MouseSabido", "MIVDPVEPHGEMK", "AQUA4SWATH_MouseSabido",
"NAAEIQDFPFDK", "AQUA4SWATH_Spyo", "NDDLELALK",
"AQUA4SWATH_MycoplasmaSchmidt","NDHTASILDR", "AQUA4SWATH_HMLangeC",
"NDVTEIQGIPGAASGLIK", "AQUA4SWATH_HMLangeB", "NFPDAFEYNDVSR",
"AQUA4SWATH_HMLangeC", "NPDGTVTVISR", "AQUA4SWATH_HMLangeE",
"NSDVTINTLK", "AQUA4SWATH_HMLangeE", "NTDFNGVNNIHQK",
"AQUA4SWATH_YeastA", "NTDSSNDLTR", "AQUA4SWATH_HMLangeD",
"NTEITISGISK", "AQUA4SWATH_MycoplasmaSchmidt","NYGVTFPVLAK",
"AQUA4SWATH_PombeSchmidt", "QAQELADLTK", "AQUA4SWATH_Spyo",
"QEPAAPSLSPAVSAK", "AQUA4SWATH_MouseSabido", "QNLESDLTNLIK",
"AQUA4SWATH_HMLangeE", "SDESVSEPR", "AQUA4SWATH_HMLangeF",
"SDLGVHLR", "AQUA4SWATH_MouseSabido", "SDNLSQHIK",
"AQUA4SWATH_YeastA", "SDSSDTPPLPSPPGK", "AQUA4SWATH_HMLangeC",
"SDSYVELSQYR", "AQUA4SWATH_HumanEbhardt", "SEFAYGSFVR",
"AQUA4SWATH_Tuberculosis", "SFANAGLSITEINEK", "AQUA4SWATH_MycoplasmaSchmidt",
"SGEGEVSGLLR", "AQUA4SWATH_MouseSabido", "SGIHTLQELLSK",
"AQUA4SWATH_MycoplasmaSchmidt","SGTTEPDAGLTER", "AQUA4SWATH_Tuberculosis",
"SGVISGGASDLK", "AQUA4SWATH_MouseSabido", "SIDVTGQGFSLIQK",
"AQUA4SWATH_HMLangeB", "SNSYFFQNPPK", "AQUA4SWATH_PombeSchmidt",
"SQFVVSSDSSK", "AQUA4SWATH_HMLangeF", "SSGPTSLFAVTVAPPGAR",
"AQUA4SWATH_HumanEbhardt", "SSSESGFYDAESLK", "AQUA4SWATH_YeastA",
"STVDQIHNEMTVLER", "AQUA4SWATH_PombeSchmidt", "SVLEDTTSYEEAK",
"AQUA4SWATH_HMLangeA", "SWATGSPDSSNR", "AQUA4SWATH_HMLangeA",
"SYGAQVDVVRPLK", "AQUA4SWATH_YeastA", "TALFEEISR",
"AQUA4SWATH_MouseSabido", "TASVSIDQTEPPK", "AQUA4SWATH_HMLangeB",
"TDSTQVSDVR", "AQUA4SWATH_HMLangeB", "TEVITHANLVR",
"AQUA4SWATH_Lepto", "TFADGSLAFR", "AQUA4SWATH_HMLangeC",
"TFDLGEVGR", "AQUA4SWATH_Lepto", "TGAPVYSTFYIFR",
"AQUA4SWATH_YeastA", "TGDGSDVTSDFTK", "AQUA4SWATH_HMLangeB",
"TGGDEFDEAIIK", "AQUA4SWATH_Lepto", "TGQLDELEK",
"AQUA4SWATH_MouseSabido", "TIVGVSEDFAALR", "AQUA4SWATH_Tuberculosis",
"TIVIHAGEDDLGK", "AQUA4SWATH_PombeSchmidt", "TPAEAIYGEYVDK",
"AQUA4SWATH_PombeSchmidt", "TPAHILHPQK", "AQUA4SWATH_MycoplasmaSchmidt",
"TPEVSFLPEEATEEAGVR", "AQUA4SWATH_HumanEbhardt", "TPGDFTFENAEK",
"AQUA4SWATH_PombeSchmidt", "TSDTGEEEAITDSTEANGK", "AQUA4SWATH_HMLangeC",
"TSIALDTILNQK", "AQUA4SWATH_Lepto", "TTDASASDPR",
"AQUA4SWATH_HMLangeF", "TTEEFSIR", "AQUA4SWATH_Tuberculosis",
"TVADVDSLLR", "AQUA4SWATH_Tuberculosis", "TVLAQVNNPFIVPLK",
"AQUA4SWATH_PombeSchmidt", "TVLPDPVFNNTLVTR", "AQUA4SWATH_MycoplasmaSchmidt",
"TYDGTNSDAASR", "AQUA4SWATH_HMLangeG", "TYEDGSSVEYR",
"AQUA4SWATH_HMLangeG", "TYVEVVHQSVAPDSTQK", "AQUA4SWATH_HMLangeE",
"TYVEVVHQSVAQDSTQK", "AQUA4SWATH_HMLangeE", "VAAQELANADK",
"AQUA4SWATH_Spyo", "VAGDQTSAVLR", "AQUA4SWATH_HMLangeA",
"VAQLEQVYIR", "AQUA4SWATH_HumanEbhardt", "VATAVFNNPAGLDK",
"AQUA4SWATH_Lepto", "VDITYNYPVR", "AQUA4SWATH_HMLangeF",
"VDLSAPLLPK", "AQUA4SWATH_HMLangeG", "VDPGQVISVR",
"AQUA4SWATH_Spyo", "VESPVLPPVLVPK", "AQUA4SWATH_MouseSabido",
"VGDTVLYGK", "AQUA4SWATH_Lepto", "VGEPVALSEEER",
"AQUA4SWATH_HumanEbhardt", "VGGHAFVIDGADGR", "AQUA4SWATH_Spyo",
"VGGPADFLAFPR", "AQUA4SWATH_Spyo", "VHLVQSNHNR",
"AQUA4SWATH_PombeSchmidt", "VHQLLPLPK", "AQUA4SWATH_MouseSabido",
"VIEEFYDQTWNHR", "AQUA4SWATH_HMLangeF", "VIVGGSSEYK",
"AQUA4SWATH_MouseSabido", "VLDQLLLPYTTK", "AQUA4SWATH_YeastA",
"VNIQGDGTLSASQK", "AQUA4SWATH_HMLangeB", "VNPETGIIDYDTLEK",
"AQUA4SWATH_YeastA", "VNSMMETMTGK", "AQUA4SWATH_PombeSchmidt",
"VSALLEALPK", "AQUA4SWATH_Tuberculosis", "VSANVQDVTTEDVEK",
"AQUA4SWATH_HMLangeE", "VSPTDIEEGMR", "AQUA4SWATH_YeastB",
"VSSGINPDIELNR", "AQUA4SWATH_Tuberculosis", "VTGPVVDVEFPR",
"AQUA4SWATH_Tuberculosis", "VVDGEEVTEYTTK", "AQUA4SWATH_Spyo",
"VVLTGTDAENIVR", "AQUA4SWATH_Spyo", "VYVYALDQTR",
"AQUA4SWATH_HMLangeD", "VYVYAVDQTR", "AQUA4SWATH_HMLangeA",
"WQDDTGPSDK", "AQUA4SWATH_HMLangeE", "WSYVAYDESDK",
"AQUA4SWATH_HMLangeE", "WTGHDVTVVQR", "AQUA4SWATH_HMLangeB",
"WVSLDDWTYSK", "AQUA4SWATH_HMLangeE", "YAVYWDSSNPR",
"AQUA4SWATH_HMLangeB", "YFNDGDIVEGTIVK", "AQUA4SWATH_Tuberculosis",
"YGEDDSLSVEGFR", "AQUA4SWATH_HMLangeF", "YGGHSMSDPGTTYR",
"AQUA4SWATH_YeastB", "YGPLSGVNVVYDQR", "AQUA4SWATH_HumanEbhardt",
"YPDHYEVER", "AQUA4SWATH_Tuberculosis", "YSQAADSTK",
"AQUA4SWATH_HMLangeB", "YTDLNSNDVTGLR", "AQUA4SWATH_HumanEbhardt",
"YTIGPILDPETK", "AQUA4SWATH_MycoplasmaSchmidt","YTSDPDVTSVGPSK",
"AQUA4SWATH_HMLangeA", "YVILQLLSGETR", "AQUA4SWATH_MycoplasmaSchmidt",
"YVPIHTIDDGYSVIK", "AQUA4SWATH_YeastB", "YVQDGTYTAK",
"AQUA4SWATH_HMLangeD", "YYDYTLSINGK", "AQUA4SWATH_HMLangeD"
)
dbPath <- system.file("extdata", "test_data.osw", package = "interpretproteinidentification")
expect_equal(readSQLiteFile(dbPath), oswEdges)
})
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