Man pages for kdaily/MEMA
Functions to preprocess and normalize MEMA data
| autoMMCluster | Cluster using a Mixture Model |
| calcQAScore | Calculate a QA score for MEMAs |
| cleanColumnNames | Change the periods in the column names to spaces |
| coerceAllECM | Coerce the All ECM contents to standard format |
| convertColumnNames | Convert column names in a data.table |
| CV | Calculate Coefficient of Variation (CV) |
| kmeansCluster | kMeans cluster an intensity value |
| loessModel | Create a median normalized loess model of an array |
| melt8Well | Melt raw population dataset to combine wells |
| mergeCytoMain | Merge the Cyto and Main data files |
| mergeMetadata | merge the data and metadata on the well index column |
| mergeSpotMetadata | Merge the data and metadata on the well index column |
| normProfToCol1 | Normalize the proliferation ratio signal to the collagen 1... |
| normWellsWithinPlate | Normalize to a base MEP |
| numericMedian | Return the median of a vector as a numeric value |
| popDT | Annotated data from a 4 plate experiment |
| positionParms | Deriving Position-based Parameters |
| randomizePositions | Randomize a vector of values |
| readLogData | Read in and parse an Aushon XML log file |
| readMetadata | Read metadata from a multi-sheet excel file |
| readSpotMetadata | Read the spot metadata from a gal file |
| removeColumnNameSpaces | Remove spaces in the column names |
| rotateMetadata | Rotate the metadata 180 degrees in Array space |
| spotCellDensities | Calculate the neighborhood density around each cell |
| spotMetadata | Data from a GAL file and a log file that include spot... |
| summarizeToSpot | Summarize cell data to spot level |
| wellAN | Returns a character vector of alphanumeric well names |
