normWellsWithinPlate: Normalize to a base MEP
In kdaily/MEMA: Functions to preprocess and normalize MEMA data

Description Usage Arguments Value Details

Normalizes one channel of values for all MEPs in a multi-well plate to one base MEP.

1	normWellsWithinPlate(DT, value, baseECM, baseGF)

`DT`	A `data.table` that includes a numeric value column to be normalized, a `ECMpAnnotID` column that has the printed ECM names and a `Growth.Factors` or `LigandAnnotID`column that has the growth factor names.
`value`	The name of the column of values to be normalized
`baseECM`	A regular expression for the name or names of the printed ECM(s) to be normalized against
`baseGF`	A regular expression for the name or names of the soluble growth factors to be normalized against

A numeric vector of the normalized values

normWellsWithinPlate normalizes the value column of all MEPs by dividing the median value of the replicates of the MEP that is the pairing of baseECM with baseGF.

kdaily/MEMA documentation built on May 20, 2019, 8:28 a.m.