mixcr: mixcr

In kendomaniac/rCASC: rCASC reproducible Classification Analysis of Single Cell Sequencing Data

mixcr

Description

This function creates mixcrFiles from bulk TCRseq

Usage

mixcr(
  group = c("sudo", "docker"),
  scratch.folder,
  fastqPath,
  resFolderCustom = "NULL"
)

Arguments

group	a character string. Two options: sudo or docker, depending to which group the user belongs
scratch.folder	a character string indicating the path of the scratch folder
fastqPath	Path of fastq folder
resFolderCustom	optional parameter. Default will store the results in fastqPath otherwise will store the results in resFolderCustom path.

Value

a formatted mixcr file

Author(s)

Luca Alessandrì

Examples

## Not run: 
library(rCASC)
dir.create("scratch")
scratch.folder=paste(getwd(),"scratch",sep="/")
fastqPath=paste(getwd(),"fastq",sep="/")
resFolder=paste(getwd(),"resFolder",sep="/")
dir.create(resFolder)
mixcr(group="docker",scratch.folder=scratch.folder,fastqPath=fastqPath,resFolderCustom=resFolder)

## End(Not run)

kendomaniac/rCASC documentation built on July 3, 2024, 6:05 a.m.