mixmodels: mixModels

In kendomaniac/rCASC: rCASC reproducible Classification Analysis of Single Cell Sequencing Data

mixModels

Description

This function executes a ubuntu docker that performs mixModels algorithm

Usage

mixmodels(
  group = c("sudo", "docker"),
  scratch.folder,
  file,
  geneList,
  separator,
  k,
  maxit = 10000
)

Arguments

group	a character string. Two options: sudo or docker, depending to which group the user belongs
scratch.folder	a character string indicating the path of the scratch folder
file	a character string indicating the path of the count matrix
geneList	a character string indicating the path of the geneList matrix (no header, no row names)
separator	separator used in count file, e.g. '\t', ','
k	number of soft labels to divide the density
maxit	number of max iteration

Value

plot

Author(s)

Luca Alessandri, alessandri [dot] luca1991 [at] gmail [dot] com, University of Torino

Examples

## Not run: 
dir.create("scratch")
mixmodels("docker", scratch.folder=paste(getwd(),"/scratch",sep=""), file=paste(getwd(),"/setA.csv",sep=""),geneList=paste(getwd(),"/geneList.csv",sep=""),separator=",",k=3,maxit=10)

## End(Not run)

kendomaniac/rCASC documentation built on July 3, 2024, 6:05 a.m.