saver: Saver

In kendomaniac/rCASC: rCASC reproducible Classification Analysis of Single Cell Sequencing Data

Saver

Description

This function performs Data normalization and prediction with SAVER

Usage

saver(group = c("sudo", "docker"), scratch.folder, file, separator, ncores)

Arguments

group	a character string. Two options: sudo or docker, depending to which group the user belongs
scratch.folder	a character string indicating the path of the scratch folder
file	a character string indicating the path of the file, with file name and extension included. The file must contain library normalized cells, log transformed counts, and scaled genes
separator	separator used in count file, e.g. '\t', ','
ncores	number of cores to use

Value

predicted matrix

Author(s)

Luca Alessandri , alessandri [dot] luca1991 [at] gmail [dot] com, University of Torino

Examples

## Not run: 
saver(group=c("sudo"), scratch.folder="/home/user/saver/inDocker/scratch/", file="/home/user/saver/inDocker/data/setA.csv",separator=",",ncores=16)

## End(Not run)

kendomaniac/rCASC documentation built on July 3, 2024, 6:05 a.m.