scAtomic: scAtomic

In kendomaniac/rCASC: rCASC reproducible Classification Analysis of Single Cell Sequencing Data

scAtomic

Description

This function executes a ubuntu docker that execute scAtomic on a csv file

Usage

scAtomic(group = c("sudo", "docker"), scratch.folder, file, separator)

Arguments

group	a character string. Two options: sudo or docker, depending to which group the user belongs
scratch.folder	a character string indicating the path of the scratch folder
file	a character string indicating the path of the file, with file name and extension included
separator	separator used in count file, e.g. '\t', ','

Value

results

Author(s)

Raffaele Calogero

Examples

## Not run: 
scAtomic(group="docker",scratch.folder="/home/lucastormreig/sc-atomic/wtc1cls1/",file="/home/lucastormreig/sc-atomic/wtc1cls1/s1abr_wt_c1_Cluster1.csv",separator=",")

## End(Not run)

kendomaniac/rCASC documentation built on July 3, 2024, 6:05 a.m.