slogosR: slogosR

In kendomaniac/rCASC: rCASC reproducible Classification Analysis of Single Cell Sequencing Data

slogosR

Description

This function creates slogs plot on the basis of the output of gibbsR function

Usage

slogosR(
  group = c("sudo", "docker"),
  scratch.folder,
  gibbsCoresPath,
  resFolderCustom = "NULL"
)

Arguments

group	a character string. Two options: sudo or docker, depending to which group the user belongs
scratch.folder	a character string indicating the path of the scratch folder
gibbsCoresPath	Path to the cores folder that is generated as part of the results of gibbsR function.
resFolderCustom	optional parameter. Default will store the results in fastqPath otherwise will store the results in resFolderCustom path.

Value

an indexed genome compliant with 10XGenomics cellranger

Author(s)

Luca Alessandrì

Examples

## Not run: 
library(rCASC)
dir.create("scratch")
scratch.folder=paste(getwd(),"scratch",sep="/")
gibbsCoresPath=paste(getwd(),"fastq",sep="/")
resFolder=paste(getwd(),"resFolder",sep="/")
dir.create(resFolder)
newFolder=paste(results,"res",list.files(paste(results,"res",sep="/")),"cores",sep="/")
slogosR(group="docker",scratch.folder,newFolder,resFolderCustom=newFolder)

## End(Not run)

kendomaniac/rCASC documentation built on July 3, 2024, 6:05 a.m.