API for kevincjnixon/ChIPATAC
Wrapper functions for useful genomic analyses like ChIP-seq or ATAC-seq.
| Global functions | |
|---|---|
| FeatureEnrichment | Man page Source code |
| TF_plot | Source code |
| addRank | Source code |
| addSym | Man page Source code |
| aggrAcc | Man page Source code |
| bsAnno | Source code |
| checkBamSeqStyle | Source code |
| chrHeatMap | Man page Source code |
| chrHeatMat | Man page Source code |
| compHOMER | Man page Source code |
| custAnnoSum | Source code |
| customGREAT | Man page Source code |
| factorFootprints2 | Source code |
| getAnnoGenes | Man page Source code |
| getBamTargets | Source code |
| getFreqHits | Source code |
| getGenomeCov | Source code |
| getOL_gr | Source code |
| listFFp2 | Source code |
| makeCovList | Man page Source code |
| makeNames | Source code |
| plotMetaGene | Man page Source code |
| plotMetaGene2 | Source code |
| plotRes | Source code |
| plotResBar | Source code |
| plotVenn_gr | Man page Source code |
| pwm2pfm | Source code |
| readBed | Man page Source code |
| readBed2 | Man page Source code |
| retRegion | Man page Source code |
| roundup | Source code |
| scaleMeta | Man page Source code |
| scalefun | Man page Source code |
| writeBETA | Man page Source code |
| writeGTF | Man page Source code |
