plotVenn_gr: Function to plot Venn diagram of overlapping peaks

In kevincjnixon/ChIPATAC: Wrapper functions for useful genomic analyses like ChIP-seq or ATAC-seq.

Function to plot Venn diagram of overlapping peaks

Description

Function to plot Venn diagram of overlapping peaks

Usage

plotVenn_gr(
  x,
  title = "Venn Diagram",
  cols = "Dark2",
  lty = "blank",
  scale = F,
  retVals = F
)

Arguments

x	named list of GenomicRagnes objects to compare. Maximum 5 sets of regions.
title	String indicating title of plot
cols	colour palette to use. Can be RColorBrewer Palette, or string of rgb, hexadecimal, or colour names the same length of 'x'
lty	Line type. Default="blank" for no lines. 1 for solid lines, 2 for dashed lines, etc.
scale	Boolean indicating if circles should be scaled to the size of each region. Works for comaparisons of less than 4.
retVals	Boolean indicating if overlap regions should be returned. Default=FALSE.

Value

Venn diagram plot and if retVals=T, a named list of GenomicRanges for each overlapping region

kevincjnixon/ChIPATAC documentation built on May 25, 2023, 9:33 p.m.