chrHeatMap: Plot a heatmap of binned signal across the whole genome

In kevincjnixon/ChIPATAC: Wrapper functions for useful genomic analyses like ChIP-seq or ATAC-seq.

Plot a heatmap of binned signal across the whole genome

Description

Plot a heatmap of binned signal across the whole genome

Usage

chrHeatMap(
  chrHeatMat,
  clusterSamples = TRUE,
  showColNames = TRUE,
  title = "",
  scaleValue = "score"
)

Arguments

chrHeatMat	output of chrHeatMat() after binning. Not that smaller binSize may cause memory errors.
clusterSamples	Boolean indicating if samples (columns) should be hierarchically clustered (TRUE) or remain in order (FALSE). Can be a data frame for grouping samples with row.names=names(GRList) and columns indicating annotations for groups.
showColNames	Boolean indicating if sample names (column names) should be shown. Default is TRUE.
title	character containing title for heatmap
scaleValue	character containing the title for the heatmap scale- Default is 'score'

Value

Prints a ComplexHeatmap with binned chromosomes as rows, and samples as columns

kevincjnixon/ChIPATAC documentation built on May 25, 2023, 9:33 p.m.