writeBETA: Function to export GenomicRanges object for use with Cistrome...

In kevincjnixon/ChIPATAC: Wrapper functions for useful genomic analyses like ChIP-seq or ATAC-seq.

Function to export GenomicRanges object for use with Cistrome BETA

Description

Function to export GenomicRanges object for use with Cistrome BETA

Usage

writeBETA(x, peakID, filename, scoreCol = "V7")

Arguments

x	GenomicRanges object to export
peakID	String or String vector to use to identify peak names (will be concatenated to the row number of each peak)
filename	String of path to export results (Should end in .bed)
scorCol	String indicating column name in GenomicRanges object that should be used for scoring peaks in BETA analysis. Default="V7"

kevincjnixon/ChIPATAC documentation built on May 25, 2023, 9:33 p.m.