chrHeatMat: Average signal across the genome in bins for a list of...

In kevincjnixon/ChIPATAC: Wrapper functions for useful genomic analyses like ChIP-seq or ATAC-seq.

Average signal across the genome in bins for a list of GRanges objects

Description

Takes a named list of GRanges objects containing a score column to be averaged in bins across the genome

Usage

chrHeatMat(GRList, scoreCol, binSize = 1e+05)

Arguments

GRList	Named list of GRanges objects - each GRanges object should be from the same organism/genome build and should contain seqlengths
scoreCol	Name of column in GRanges object containing the metric to be averaged across each bin
binSize	Size of each genomic bin. Default is 100kb to help save memory for larger datasets

Value

a list containing a data frame ('mat') of the binned results and a GenomicRanges ('GR') object containing the binned results.

kevincjnixon/ChIPATAC documentation built on May 25, 2023, 9:33 p.m.