getAnnoGenes: Subset and extract genes from ChIPseeker annotations

In kevincjnixon/ChIPATAC: Wrapper functions for useful genomic analyses like ChIP-seq or ATAC-seq.

Subset and extract genes from ChIPseeker annotations

Description

Subset and extract genes from ChIPseeker annotations

Usage

getAnnoGenes(anno, feature = "all", unique = T, geneCol = "SYMBOL")

Arguments

anno	ChIPseeker annotation (csAnno) object
feature	string indicating the genomic features to subset e.g. "promoter", "intergenic". Default is "all" and will not subset features.
unique	Boolean indicating if only unique genes should be returned. Default is TRUE.
geneCol	string indicating the column name in anno@anno containing the gene identifiers to be returned. Default is "SYMBOL" for gene symbols.

Value

Character vector of gene IDs.

kevincjnixon/ChIPATAC documentation built on May 25, 2023, 9:33 p.m.