writeGTF: Function to export GenomicRanges to GTF format

In kevincjnixon/ChIPATAC: Wrapper functions for useful genomic analyses like ChIP-seq or ATAC-seq.

Function to export GenomicRanges to GTF format

Description

Function to export GenomicRanges to GTF format

Usage

writeGTF(x, source = "ATAC-peakset", peakID, filename)

Arguments

x	GenomicRanges object to export
source	String to identify the source of peaks in GTF file. Default="ATAC-peakset"
peakID	String or string vector to identify unique peaks. Will be set as 'gene_id' in gtf file and concatenated with row number of each peak.
filename	String of path to export gtf file (should end in .gtf)

kevincjnixon/ChIPATAC documentation built on May 25, 2023, 9:33 p.m.