API for kevinlkx/mapgen
Multi-function software that performs enrichment, functionally-informed genetic fine-mapping and gene mapping
| Global functions | |
|---|---|
| %>% | Man page |
| LD_diagnosis_susie_rss | Man page Source code |
| add_LD_bigSNP | Source code |
| allele.qc | Source code |
| annotate_snps_binary | Source code |
| annotator_merged | Source code |
| assign_snp_locus | Man page Source code |
| block_view_summary | Man page Source code |
| clean_sumstats | Man page Source code |
| compute_distance_weight | Source code |
| compute_gene_pip | Man page Source code |
| extract_gene_level_result | Man page Source code |
| find_nearest_genes | Man page Source code |
| gene_cs | Man page Source code |
| gene_manhattan_plot | Man page Source code |
| gene_view_summary | Man page Source code |
| get_LD_bigSNP | Source code |
| get_UKBB_region_info | Man page Source code |
| get_gene_region | Source code |
| get_locus_level_gene_pip | Man page Source code |
| get_tss | Source code |
| harmonize_sumstats_LD | Man page Source code |
| load_UKBB_LDREF | Man page Source code |
| make_genetrack_obj | Source code |
| make_genomic_annots | Man page Source code |
| make_ranges | Source code |
| match_gwas_LDREF | Man page Source code |
| match_gwas_bigsnp | Man page Source code |
| merge_susie_sumstats | Man page Source code |
| nearby_interactions | Man page Source code |
| partition_pip_annots | Man page Source code |
| partition_pip_regions | Man page Source code |
| pip_structure_plot | Man page Source code |
| prepare_susie_data_with_torus_result | Man page Source code |
| prepare_torus_input_files | Man page Source code |
| process_ABC | Man page Source code |
| process_finemapping_sumstats | Man page Source code |
| process_gwas_sumstats | Man page Source code |
| process_loop_data | Man page Source code |
| process_narrowpeaks | Source code |
| process_pcHiC | Man page Source code |
| read_LD | Man page Source code |
| read_LD_SNP_info | Man page Source code |
| run_finemapping | Man page Source code |
| run_torus | Man page Source code |
| snp_view_summary | Man page Source code |
| subtract_exons | Source code |
| sum_pip_annots | Source code |
| sum_pip_regions | Source code |
| susie_finemap_region | Man page Source code |
| track_plot | Man page Source code |
