partition_pip_regions: Partition PIPs into disjoint functional annotation regions
In kevinlkx/mapgen: Multi-function software that performs enrichment, functionally-informed genetic fine-mapping and gene mapping
View source: R/partition_pips.R
partition_pip_regions R Documentation
Partition PIPs into disjoint functional annotation regions
Description
Partition PIPs into disjoint functional annotation regions
Usage
partition_pip_regions(finemapstats, annots.list)
Arguments
finemapstats
A GRanges object of fine-mapping summary statistics
annots.list
A list of GRanges objects of disjoint functional annotations.
Note: the annotation regions need to be disjoint!
Value
A list with a data frame with the sum of PIPs and
a data frame with the number of SNPs included for each annotation category.
kevinlkx/mapgen documentation built on March 31, 2024, 11:03 p.m.
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View source: R/partition_pips.R
| partition_pip_regions | R Documentation |
Partition PIPs into disjoint functional annotation regions
Description
Partition PIPs into disjoint functional annotation regions
Usage
partition_pip_regions(finemapstats, annots.list)
Arguments
finemapstats |
A GRanges object of fine-mapping summary statistics |
annots.list |
A list of GRanges objects of disjoint functional annotations. Note: the annotation regions need to be disjoint! |
Value
A list with a data frame with the sum of PIPs and a data frame with the number of SNPs included for each annotation category.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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