get_UKBB_region_info: Get region info with filenames of LD matrices and variant...

In kevinlkx/mapgen: Multi-function software that performs enrichment, functionally-informed genetic fine-mapping and gene mapping

Get region info with filenames of LD matrices and variant information

Description

Get region info with filenames of LD matrices and variant information

Usage

get_UKBB_region_info(
  LD_Blocks,
  LDREF.dir,
  prefix = "ukb_b37_0.1",
  LD_matrix_ext = "RDS",
  snp_info_ext = "Rvar"
)

Arguments

LD_Blocks	A data frame of LD blocks
LDREF.dir	Directory of UKBB LD reference files
prefix	prefix name of the UKBB LD reference files
LD_matrix_ext	File extension of LD matrix files
snp_info_ext	File extension of SNP information files

Value

A data frame with information of the variants in the LD matrix.

kevinlkx/mapgen documentation built on March 31, 2024, 11:03 p.m.