Files in kevinzhongxu/CasOligo
A R package to search the gRNA-target-site oligo for designing the taxon-specific guide RNA used for CRISPR-Cas Selective Amplicon Sequencing (CCSAS) to assess the eukaryotic microbiome of hosts (e.g. metazoans, plant)
.Rbuildignore
.gitignore
CasOligo.Rproj
DESCRIPTION
Fig1.jpg
LICENSE.txt
NAMESPACE
R/cas9.gRNA.oligo1.R
R/cas9.gRNA.oligo1m.R
R/cas9.gRNA.oligo2.R
R/data.pacific_oyster_18S_V4.R
R/data.pacific_oyster_18S_V4_3seqs.R
R/data.prb1.R
R/data.prb2.R
R/data.score.R
R/data.silva_v119_18S_99rep_V4.R
R/search.db.byid.R
R/search.db.byname.R
README.html
README.md
data/pacific_oyster_18S_V4.rda
data/pacific_oyster_18S_V4_3seqs.rda
data/prb.score.rda
data/prb1.rda
data/prb2.rda
data/silva_v119_18S_99rep_V4.rda
inst/extdata/oligo_distribution_among_taxa.png
inst/extdata/pacific_oyster_18S_V4.fasta
inst/extdata/pacific_oyster_18S_V4_3seqs.fasta
man/cas9.gRNA.oligo1.Rd
man/cas9.gRNA.oligo1m.Rd
man/cas9.gRNA.oligo2.Rd
man/pacific_oyster_18S_V4.Rd
man/pacific_oyster_18S_V4_3seqs.Rd
man/prb.score.Rd
man/prb1.Rd
man/prb2.Rd
man/search.db.byid.Rd
man/search.db.byname.Rd
man/silva_v119_18S_99rep_V4.Rd
