kgori/sigfit: Flexible Bayesian inference of mutational signatures

This package implements Bayesian models for fitting and extracting mixtures of mutational signatures from mutation count data. It provides interfaces to four different Bayesian signature models (multinomial, Poisson, normal and negative binomial), as well as auxiliary functions for analysing and plotting resulting data. Markov chain Monte Carlo sampling is performed using Stan.

Getting started

Package details

Maintainer
LicenseGPL (>=3)
Version2.2
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("remotes")
remotes::install_github("kgori/sigfit")
kgori/sigfit documentation built on Feb. 3, 2022, 12:04 p.m.