sigfit-package: sigfit: flexible Bayesian inference of mutational signatures

Description References

Description

This package implements Bayesian models for fitting and extracting mixtures of mutational signatures from mutation count data. It provides interfaces to four different Bayesian signature models (multinomial, Poisson, normal and negative binomial), as well as auxiliary functions for analysing and plotting resulting data. Markov chain Monte Carlo sampling is performed using Stan.

References

Gori K, Baez-Ortega A (2018). sigfit: flexible Bayesian inference of mutational signatures. bioRxiv, 372896. DOI: 10.1101/372896.


kgori/sigfit documentation built on Feb. 3, 2022, 12:04 p.m.