cosmic_signatures_v3.2: Single base substitution signatures from COSMIC v3.2
In kgori/sigfit: Flexible Bayesian inference of mutational signatures
Description
Usage
Format
Source
Description
A data set of 78 SBS signatures from COSMIC v3.2 (March 2021).
With a few exceptions, these signatures were extracted
using SigProfiler (as described in Alexandrov et al., 2020) from the 2,780
whole-genome variant calls produced by the ICGC/TCGA Pan Cancer Analysis of
Whole Genomes (PCAWG) Network.
The following signatures are annotated as "Possible sequencing artefacts":
SBS27, SBS43, SBS45-60.
Usage
1
Format
An object of class matrix with 78 rows and 96 columns.
Source
https://cancer.sanger.ac.uk/cosmic/signatures/SBS/
https://cancer.sanger.ac.uk/signatures/downloads/
kgori/sigfit documentation built on Feb. 3, 2022, 12:04 p.m.
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Description Usage Format Source
Description
A data set of 78 SBS signatures from COSMIC v3.2 (March 2021). With a few exceptions, these signatures were extracted using SigProfiler (as described in Alexandrov et al., 2020) from the 2,780 whole-genome variant calls produced by the ICGC/TCGA Pan Cancer Analysis of Whole Genomes (PCAWG) Network. The following signatures are annotated as "Possible sequencing artefacts": SBS27, SBS43, SBS45-60.
Usage
1 |
Format
An object of class matrix with 78 rows and 96 columns.
Source
https://cancer.sanger.ac.uk/cosmic/signatures/SBS/
https://cancer.sanger.ac.uk/signatures/downloads/
R Package Documentation
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Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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