Files in kgori/sigfit
Flexible Bayesian inference of mutational signatures

.Rbuildignore
.gitignore
.travis.yml
CHANGELOG
DESCRIPTION
LICENSE
NAMESPACE
R/data.R R/sigfit-package.R R/sigfit_estimation.R R/sigfit_plotting.R R/sigfit_utility.R R/stanmodels.R README.md
configure
configure.win
data/cosmic_signatures.RData
data/cosmic_signatures_v3.RData
data/cosmic_signatures_v3_strand.RData
data/counts_119breast.RData
data/counts_119breast_strand.RData
data/counts_21breast.RData
data/counts_88liver.RData
data/counts_88liver_strand.RData
data/sigfit_vignette_data.RData
data/variants_119breast.RData
data/variants_119breast_strand.RData
data/variants_21breast.RData
data/variants_88liver.RData
data/variants_88liver_strand.RData
inst/CITATION
inst/include/stan_meta_header.hpp
inst/stan/include/common_functions.stan
inst/stan/include/license.stan
inst/stan/sigfit_ext_emu.stan
inst/stan/sigfit_ext_nmf.stan
inst/stan/sigfit_fit_emu.stan
inst/stan/sigfit_fit_nmf.stan
inst/stan/sigfit_fit_nmf_hier2.stan
inst/stan/sigfit_fitex_emu.stan
inst/stan/sigfit_fitex_nmf.stan
logo.png
man/build_catalogues.Rd man/build_opps_matrix.Rd man/convert_signatures.Rd man/cosine_sim.Rd man/cosmic_signatures_v3.Rd man/cosmic_signatures_v3_strand.Rd man/default_sig_palette.Rd man/extract_signatures.Rd man/extract_signatures_initialiser.Rd man/fetch_cosmic_data.Rd man/fit_extract_signatures.Rd man/fit_signatures.Rd man/get_loglik.Rd man/get_reconstructions.Rd man/human_trinuc_freqs.Rd man/l2_norm.Rd man/letterwrap.Rd man/make_colors.Rd man/match_signatures.Rd man/mut_types.Rd man/plot_all.Rd man/plot_exposures.Rd man/plot_gof.Rd man/plot_ppc.Rd man/plot_reconstruction.Rd man/plot_spectrum.Rd man/remove_zeros_.Rd man/retrieve_pars.Rd man/rev_comp.Rd man/sigfit-package.Rd man/simulate_ppc.Rd man/stan_models.Rd man/to_matrix.Rd
src/Makevars
src/Makevars.win
src/stanExports_sigfit_ext_emu.cc
src/stanExports_sigfit_ext_emu.h
src/stanExports_sigfit_ext_nmf.cc
src/stanExports_sigfit_ext_nmf.h
src/stanExports_sigfit_fit_emu.cc
src/stanExports_sigfit_fit_emu.h
src/stanExports_sigfit_fit_nmf.cc
src/stanExports_sigfit_fit_nmf.h
src/stanExports_sigfit_fit_nmf_hier2.cc
src/stanExports_sigfit_fit_nmf_hier2.h
src/stanExports_sigfit_fitex_emu.cc
src/stanExports_sigfit_fitex_emu.h
src/stanExports_sigfit_fitex_nmf.cc
src/stanExports_sigfit_fitex_nmf.h
vignettes/sigfit_vignette.Rmd
kgori/sigfit documentation built on Aug. 9, 2019, 3:28 p.m.