cosmic_signatures_strand_v3: Single base substitution signatures from COSMIC v3 with...
In kgori/sigfit: Flexible Bayesian inference of mutational signatures
Description
Usage
Format
Source
Description
A data set of 65 transcriptional strand-wise SBS signatures from COSMIC v3.0 (May 2019).
These signatures were extracted using SigProfiler (as described in Alexandrov
et al., 2020) from the 2,780 whole-genome variant calls produced by the
ICGC/TCGA Pan Cancer Analysis of Whole Genomes (PCAWG) Network.
The following signatures are annotated as "Possible sequencing artefacts":
SBS27, SBS43, SBS45-60.
Usage
1
Format
An object of class matrix with 65 rows and 192 columns.
Source
https://cancer.sanger.ac.uk/cosmic/signatures/SBS/
https://www.synapse.org/#!Synapse:syn11801889
kgori/sigfit documentation built on Feb. 3, 2022, 12:04 p.m.
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Description Usage Format Source
Description
A data set of 65 transcriptional strand-wise SBS signatures from COSMIC v3.0 (May 2019). These signatures were extracted using SigProfiler (as described in Alexandrov et al., 2020) from the 2,780 whole-genome variant calls produced by the ICGC/TCGA Pan Cancer Analysis of Whole Genomes (PCAWG) Network. The following signatures are annotated as "Possible sequencing artefacts": SBS27, SBS43, SBS45-60.
Usage
1 |
Format
An object of class matrix with 65 rows and 192 columns.
Source
https://cancer.sanger.ac.uk/cosmic/signatures/SBS/
https://www.synapse.org/#!Synapse:syn11801889
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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