check_csv: Check the metadata csv files and write only the 'good'...
In khughitt/EuPathDB: Provides access to pathogen annotation resources available on EuPathDB databases
check_csv R Documentation
Check the metadata csv files and write only the 'good' entries.
Description
While we are at it, put the failed entries into their own csv file so that I
can step through and look for why they failed.
Usage
check_csv(
build_dir = "build",
file_type = "OrgDb",
bioc_version = NULL,
eu_version = NULL
)
Arguments
build_dir
Directory in which to put the data.
file_type
Is this an OrgDB, GRanges, TxDb, OrganismDbi, or BSGenome dataset?
bioc_version
Which bioconductor version is this for?
eu_version
Which eupathdb version is this for?
khughitt/EuPathDB documentation built on Nov. 4, 2023, 4:19 a.m.
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| check_csv | R Documentation |
Check the metadata csv files and write only the 'good' entries.
Description
While we are at it, put the failed entries into their own csv file so that I can step through and look for why they failed.
Usage
check_csv(
build_dir = "build",
file_type = "OrgDb",
bioc_version = NULL,
eu_version = NULL
)
Arguments
build_dir |
Directory in which to put the data. |
file_type |
Is this an OrgDB, GRanges, TxDb, OrganismDbi, or BSGenome dataset? |
bioc_version |
Which bioconductor version is this for? |
eu_version |
Which eupathdb version is this for? |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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