post_eupath_annotations: Create a series of POST requests which download all the...

In khughitt/EuPathDB: Provides access to pathogen annotation resources available on EuPathDB databases

Create a series of POST requests which download all the annotation data for a species.

Description

The only way I have figured out how to download mass data from the eupathdb is to ask for a raw dump of all available data using the GenesByGeneType WADL. Therefore, this function iterates over the various sequence types that I have noticed at the eupathdb and does that for each type.

Usage

post_eupath_annotations(
  entry = NULL,
  overwrite = FALSE,
  verbose = FALSE,
  split = 13
)

Arguments

entry	Eupathdb annotation entry.
overwrite	Overwrite existing data if it exists?
build_dir	Location to dump the resulting data.

khughitt/EuPathDB documentation built on Nov. 4, 2023, 4:19 a.m.