check_files: List the directory containing the various sqlite files and...

In khughitt/EuPathDB: Provides access to pathogen annotation resources available on EuPathDB databases

List the directory containing the various sqlite files and make sure they all have entries.

Description

Any files which do not have csv entries should be deleted, but for the moment I will move them to the current working directory in an attempt to learn about why they went wrong.

Usage

check_files(
  file_type = "OrgDb",
  bioc_version = NULL,
  eu_version = NULL,
  build_dir = "build",
  verbose = FALSE,
  destination = NULL
)

Arguments

file_type	Is this an OrgDB, GRanges, TxDb, OrganismDbi, or BSGenome dataset?
bioc_version	Which bioconductor version is this for?
eu_version	Which eupathdb version is this for?
build_dir	Location to dump files.
verbose	Talk while running?
destination	Place to put non-matched files.

khughitt/EuPathDB documentation built on Nov. 4, 2023, 4:19 a.m.