load_ah_annotations: Shortcut for loading annotation data from AnnotationHub,...

In khughitt/EuPathDB: Provides access to pathogen annotation resources available on EuPathDB databases

Shortcut for loading annotation data from AnnotationHub, making some EupathDB assumptions.

Description

Shortcut for loading annotation data from AnnotationHub, making some EupathDB assumptions.

Usage

load_ah_annotations(
  species = "Leishmania major strain Friedlin",
  service = "TriTrypDB",
  type = "OrgDb",
  eu_version = NULL,
  wanted_fields = NULL
)

Arguments

species	String containing a unique portion of the desired species.
service	Which eupath webservice is desired?
type	Data type to load.
eu_version	Gather data from a specific eupathdb version?
wanted_fields	If not provided, this will gather all columns starting with 'annot'.

Value

Big huge data frame of annotation data.

khughitt/EuPathDB documentation built on Nov. 4, 2023, 4:19 a.m.