Files in khughitt/EuPathDB
Provides access to pathogen annotation resources available on EuPathDB databases

.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
Makefile
NAMESPACE
NEWS
R/check_csv.R R/check_files.R R/clean_pkg.R R/copy_s3_file.R R/download_eupath_metadata.R R/download_uniprot_annotations.R R/eupathdb.R R/extract_eupath_orthologs.R R/extract_gene_locations.R R/get_all_metadata.R R/get_eupath_entry.R R/get_eupath_fields.R R/get_eupath_pkgnames.R R/get_kegg_orgn.R R/get_orthologs_all_genes.R R/get_orthologs_one_gene.R R/kegg_vector_to_df.R R/load_eupath_annotations.R R/load_kegg_annotations.R R/load_orgdb_annotations.R R/load_orgdb_go.R R/make_eupath_bsgenome.R R/make_eupath_granges.R R/make_eupath_organismdbi.R R/make_eupath_orgdb.R R/make_eupath_txdb.R R/make_taxon_names.R R/move_final_package.R R/orgdb_from_ah.R R/post_eupath_annotations.R R/post_eupath_go_table.R R/post_eupath_interpro.R R/post_eupath_linkout.R R/post_eupath_ortholog_table.R R/post_eupath_pathway_table.R R/post_eupath_pubmed.R R/post_eupath_raw.R R/post_eupath_snps.R R/post_eupath_table.R R/prefix_map.R R/write_eupath_metadata.R R/xref_species.R R/xref_taxonomy.R R/zzz.R README.md inst/doc/EuPathDB.R
inst/doc/EuPathDB.html
inst/doc/EuPathDB_AnnotationHub_Tutorial.R inst/doc/EuPathDB_AnnotationHub_Tutorial.Rmd
inst/doc/EuPathDB_AnnotationHub_Tutorial.html
inst/doc/EuPathDB_Developers_Guide.R inst/doc/EuPathDB_Developers_Guide.Rmd
inst/doc/EuPathDB_Developers_Guide.html
inst/doc/EuPathDB_Package_Generation_Tutorial.R inst/doc/EuPathDB_Package_Generation_Tutorial.Rmd
inst/doc/EuPathDB_Package_Generation_Tutorial.html
inst/doc/EuPathDB_trey_playground.R inst/doc/EuPathDB_trey_playground.Rmd
inst/doc/EuPathDB_trey_playground.html
inst/doc/reference.Rnw
inst/doc/reference.pdf inst/exporting_data_web_services.pdf
inst/extdata/GRanges_biocv3.9_eupathdbv42_metadata.csv
inst/extdata/OrgDb_biocv3.9_eupathdbv42_metadata.csv
inst/extdata/TxDb_biocv3.9_eupathdbv42_metadata.csv
inst/reference.Rnw
inst/reference.pdf inst/scripts/config.R inst/scripts/make-data.R inst/scripts/make-data_amoebadb.R inst/scripts/make-data_cryptodb.R inst/scripts/make-data_fungidb_evens.R inst/scripts/make-data_fungidb_odds.R inst/scripts/make-data_giardiadb.R inst/scripts/make-data_microsporidiadb.R inst/scripts/make-data_piroplasmodb.R inst/scripts/make-data_plasmodb_evens.R inst/scripts/make-data_plasmodb_odds.R inst/scripts/make-data_schistodb.R inst/scripts/make-data_toxodb.R inst/scripts/make-data_trichdb.R inst/scripts/make-data_tritrypdb_evens.R inst/scripts/make-data_tritrypdb_odds.R man/EuPathDB.Rd man/check_csv.Rd man/check_files.Rd man/clean_pkg.Rd man/copy_s3_file.Rd man/download_eupath_metadata.Rd man/download_uniprot_annotations.Rd man/download_uniprot_proteome.Rd man/extract_eupath_orthologs.Rd man/extract_gene_locations.Rd man/get_all_metadata.Rd man/get_eupath_entry.Rd man/get_eupath_fields.Rd man/get_eupath_pkgnames.Rd man/get_kegg_orgn.Rd man/get_orthologs_all_genes.Rd man/get_orthologs_one_gene.Rd man/grapes-colon-colon-colon-grapes.Rd man/kegg_vector_to_df.Rd man/load_eupath_annotations.Rd man/load_kegg_annotations.Rd man/load_orgdb_annotations.Rd man/load_orgdb_go.Rd man/load_uniprot_annotations.Rd man/make_eupath_bsgenome.Rd man/make_eupath_granges.Rd man/make_eupath_organismdbi.Rd man/make_eupath_orgdb.Rd man/make_eupath_txdb.Rd man/make_taxon_names.Rd man/move_final_package.Rd man/orgdb_from_ah.Rd man/pipe.Rd man/post_eupath_annotations.Rd man/post_eupath_go_table.Rd man/post_eupath_interpro_table.Rd man/post_eupath_linkout_table.Rd man/post_eupath_ortholog_table.Rd man/post_eupath_pathway_table.Rd man/post_eupath_pubmed_table.Rd man/post_eupath_raw.Rd man/post_eupath_snp_table.Rd man/post_eupath_table.Rd man/start_eupathdb.Rd man/write_eupath_metadata.Rd man/xref_species.Rd man/xref_taxonomy.Rd tests/testthat.R tests/travis/test_010annotation_eupathdb.R vignettes/EuPathDB_AnnotationHub_Tutorial.Rmd vignettes/EuPathDB_Developers_Guide.Rmd vignettes/EuPathDB_Package_Generation_Tutorial.Rmd vignettes/EuPathDB_trey_playground.Rmd
khughitt/EuPathDB documentation built on Sept. 10, 2019, 8:26 p.m.