download_eupath_metadata: Returns metadata for all eupathdb organisms.

In khughitt/EuPathDB: Provides access to pathogen annotation resources available on EuPathDB databases

Returns metadata for all eupathdb organisms.

Description

Returns metadata for all eupathdb organisms.

Usage

download_eupath_metadata(
  overwrite = TRUE,
  webservice = "eupathdb",
  bioc_version = NULL,
  eu_version = NULL,
  verbose = FALSE
)

Arguments

overwrite	Overwrite existing data?
webservice	Optional alternative webservice for hard-to-find species.
bioc_version	Manually set the bioconductor release if desired.
eu_version	Choose a specific eupathdb version?
verbose	Print helper message about species matching?
build_dir	Where to put the json.
limit_n	Maximum number of valid entries to return.

Value

Dataframe with lots of rows for the various species in eupathdb.

Author(s)

Keith Hughitt

khughitt/EuPathDB documentation built on Nov. 4, 2023, 4:19 a.m.