In khughitt/EuPathDB: Provides access to pathogen annotation resources available on EuPathDB databases

BiocStyle::markdown()

Overview

This tutorial describes how to generate data ready for the AnnotationHubData.

It has not yet been written, but mostly is comprised of doing the following:

```{bash make_stuff, eval=FALSE}

From the EuPathDB root directory

inst/scripts/make_data.R

Note that this will take a few days, even if the webservers never fail.

make s3

Here are a few caveats:

1.  Get familiar with makeAnnotationHubMetadata().
2.  The most likely sticking point will be mismatches between GenomeInfoDB and
    the species IDs provided by the EuPathDB.


# Session Information

```r
sessionInfo()

khughitt/EuPathDB documentation built on Nov. 4, 2023, 4:19 a.m.