query_s3_ah: As yet another test, this function will download all the AH...

In khughitt/EuPathDB: Provides access to pathogen annotation resources available on EuPathDB databases

As yet another test, this function will download all the AH data one species at a time.

Description

This may be run after the data has been uploaded to the annotationhub to ensure that all the uploaded files are actually functional.

Usage

query_s3_ah(
  testing = TRUE,
  file_type = "OrgDb",
  cachedir = "~/scratch/eupathdb/cache",
  csv = "inst/extdata/OrgDb_biocv3.10_eupathdbv46_metadata.csv"
)

Arguments

testing	Use the annotationHub TESTING service rather than production.
file_type	Type of data to query.
cachedir	Place to put the downloaded files, useful for if one's homedirectory is too small.
csv	File to check against.

khughitt/EuPathDB documentation built on Nov. 4, 2023, 4:19 a.m.