View source: R/xref_taxonomy.R
xref_taxonomy_number | R Documentation |
Previously this tried to set species and taxonomy number, but I am having it only do the number now in the hopes that it simplifies things somewhat.
xref_taxonomy_number(
metadatum,
all_taxa_ids,
verbose = FALSE,
taxon_number_column = "TaxonomyID",
metadata_taxon_column = "TaxonUnmodified"
)
verbose |
Print some information about what is found as this runs? |
metadata |
Information provided by downloading the metadata from a eupathdb sub project. |
species_column |
Because the species column name has changed. |
taxon_column |
Because the taxonomy column name has changed. |
List containing entries which pass and fail after xrefing against loadTaxonomyDb().
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