cleanByChrPvalsBonfer: Extract relevant SNP out of the QCDH data hub
In kindlychung/CollapsABEL: An R package for quantitative CDH analysis
Description
Usage
Arguments
Value
View source: R/cleanByChrPvalBonfer.R
Description
Extract relevant SNP out of the QCDH data hub
Usage
1
2
cleanByChrPvalsBonfer(hub, threshold = 5e-08, lowerPbonfer = FALSE,
forceRecalc = TRUE)
Arguments
hub
QCDH data hub
threshold
Numeric. Upper bound for minimal p value.
lowerPbonfer
Logical. When this is set to TRUE, it requires that Bonferroni-corrected minimal P should be lower than p value of either of the paired SNPs. Default to FALSE.
forceRecalc
Logical. When this is set to FALSE, this function will just return the cached info from hub. Default to TRUE.
Value
A data frame with info on all pairs of SNPs satisfying the aforementioned criteria.
kindlychung/CollapsABEL documentation built on May 20, 2019, 9:57 a.m.
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Description Usage Arguments Value
View source: R/cleanByChrPvalBonfer.R
Description
Extract relevant SNP out of the QCDH data hub
Usage
1 2 | cleanByChrPvalsBonfer(hub, threshold = 5e-08, lowerPbonfer = FALSE,
forceRecalc = TRUE)
|
Arguments
hub |
QCDH data hub |
threshold |
Numeric. Upper bound for minimal p value. |
lowerPbonfer |
Logical. When this is set to TRUE, it requires that Bonferroni-corrected minimal P should be lower than p value of either of the paired SNPs. Default to FALSE. |
forceRecalc |
Logical. When this is set to FALSE, this function will just return the cached info from |
Value
A data frame with info on all pairs of SNPs satisfying the aforementioned criteria.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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