rep_models: Given a pair of SNPs, fit a model using single and collapsed...
In kindlychung/CollapsABEL: An R package for quantitative CDH analysis
Description
Usage
Arguments
Value
Description
Given a pair of SNPs, fit a model using single and collapsed genotypes
Usage
1
rep_models(mat, snp1, snp2, pheno_name, covar_names)
Arguments
mat
A data frame containing a collection of single SNP genotypes, SNP names should be column names.
snp1
Character.Name of first SNP
snp2
Character.Name of second SNP
pheno_name
Character. Name of phenotype.
covar_names
Character. Vector of names of covariates.
Value
A data frame with five columns: snp1, snp2, p1 (p value of snp1), p2 (pvalue of snp2) and pcol (p value of collapsed genotype).
kindlychung/CollapsABEL documentation built on May 20, 2019, 9:57 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value
Description
Given a pair of SNPs, fit a model using single and collapsed genotypes
Usage
1 | rep_models(mat, snp1, snp2, pheno_name, covar_names)
|
Arguments
mat |
A data frame containing a collection of single SNP genotypes, SNP names should be column names. |
snp1 |
Character.Name of first SNP |
snp2 |
Character.Name of second SNP |
pheno_name |
Character. Name of phenotype. |
covar_names |
Character. Vector of names of covariates. |
Value
A data frame with five columns: snp1, snp2, p1 (p value of snp1), p2 (pvalue of snp2) and pcol (p value of collapsed genotype).
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.