rep_dat: Batch version of the 'rep_models' function:
In kindlychung/CollapsABEL: An R package for quantitative CDH analysis
Description
Usage
Arguments
Value
Description
Batch version of the rep_models function:
Usage
1
rep_dat(mat, snpdat, pheno_name, covar_names)
Arguments
mat
A data frame containing a collection of single SNP genotypes, SNP names should be column names.
snpdat
A data frame containing pairs of SNP names. Each row should contain a one pair.
pheno_name
Character. Name of phenotype.
covar_names
Character. Vector of names of covariates.
Value
A data frame with five columns: snp1, snp2, p1 (p value of snp1), p2 (pvalue of snp2) and pcol (p value of collapsed genotype).
kindlychung/CollapsABEL documentation built on May 20, 2019, 9:57 a.m.
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Description Usage Arguments Value
Description
Batch version of the rep_models function:
Usage
1 | rep_dat(mat, snpdat, pheno_name, covar_names)
|
Arguments
mat |
A data frame containing a collection of single SNP genotypes, SNP names should be column names. |
snpdat |
A data frame containing pairs of SNP names. Each row should contain a one pair. |
pheno_name |
Character. Name of phenotype. |
covar_names |
Character. Vector of names of covariates. |
Value
A data frame with five columns: snp1, snp2, p1 (p value of snp1), p2 (pvalue of snp2) and pcol (p value of collapsed genotype).
R Package Documentation
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We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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