taskinfo: Prepare paths and filenames for the task

Description Usage Arguments

View source: R/taskinfo.R

Description

A hepler function for sorting out folder and file names for plots, shifted bed files etc. It also figures out extension names of PLINK output.

Usage

1
taskinfo(hub, taskName, plinkArgs, initGwasArgs, initGwas = FALSE)

Arguments

hub

Environment. QCDH data hub.

taskName

Character. Name of the task.

plinkArgs

List. Arguments to be passed to PLINK

initGwasArgs

List. Arguments to be passed to PLINK

initGwas

Logical. Whether to perform a initial GWAS.


kindlychung/CollapsABEL documentation built on May 20, 2019, 9:57 a.m.