delet.muts.over.landscape: Look at numbers of deleterious mutations across the landscape

In kjgilbert/aNEMOne: Create Nemo input files and analyze Nemo output files

Description

Takes an output file from Nemo of deleterious loci genotypes, and plots the mean number of deleterious mutations per individual in a patch over the landscape.

Usage

delet.muts.over.landscape(del.file, patches.x, patches.y, num.loci,
  count.type = "total")

Arguments

del.file	The file containing deleterious loci output from Nemo.
patches.x	The number of patches on the landscape along the x-axis (parallel to expansion).
patches.y	The number of patches on the landscape along the y-axis (perpendicular to expansion).
num.loci	The number of deleterious loci that were simulated in that file.
count.type	Whether to count homozygous, heterozygous, or total number of mutations.

Value

Creates a plot over the landscape (heat map style) for the mean number of deleterious mutations per individual in a patch.

Author(s)

Kimberly J Gilbert

References

Nemo is created and maintained by Fred Guillaume. The manual and source files are available online.

kjgilbert/aNEMOne documentation built on May 20, 2019, 10:25 a.m.