fit.results.landscape: Look at landscape fitness from .fit files

In kjgilbert/aNEMOne: Create Nemo input files and analyze Nemo output files

Description

Takes an "ind_seln" output file (with quanti and delet fitness values per individual) and plots fitness over the landscape in several ways.

Usage

fit.results.landscape(input.fit.file, patches.x, patches.y,
  fitness.type = "total")

Arguments

input.fit.file	The .fit file output from Nemo.
patches.x	The number of patches on the landscape along the x-axis (parallel to expansion)
patches.y	The number of patches on the landscape along the y-axis (perpendicular to expansion)
fitness.type	Which component of fitness to plot: for the quantitative trait, for deleterious mutations, or total fitness.

Value

Creates a plot over the landscape (heat map style) for fitness of the specified component.

Author(s)

Kimberly J Gilbert

References

Nemo is created and maintained by Fred Guillaume. The manual and source files are available online.

kjgilbert/aNEMOne documentation built on May 20, 2019, 10:25 a.m.