plot1D.results: Look at 1-D simulation results over landscape
In kjgilbert/aNEMOne: Create Nemo input files and analyze Nemo output files

Description Usage Arguments Value Author(s) References

Makes 1-D plots over the landscape for population size, fitness, numbers of deleterious mutations, and environmental optimum match to the quantitative trait. Simulations must have been in 1 dimension for current implementation.

plot1D.results(input.fit.file, input.quanti.file = NULL,
  input.del.file = NULL, patches.x, patches.y, slope.opt = NULL,
  opt.rate.change = NULL, delay.env.change = NULL, generation, del.loci,
  xlimits = NULL, plot.legend = TRUE, Vs = NULL, quantiles = c(0.5,
  0.1))

`input.fit.file`	The .fit file output from Nemo.
`input.quanti.file`	The .quanti file output from Nemo which contains genotypes for the quantitative trait.
`input.del.file`	The .del file output from Nemo which contains deleterious mutation genotypes.
`patches.x`	The number of patches on the landscape along the x-axis (parallel to expansion)
`patches.y`	The number of patches on the landscape along the y-axis (perpendicular to expansion)
`slope.opt`	The slope of the environmental optimum defined in the input file.
`opt.rate.change`	The rate of change of the environment per generation defined in the input file.
`delay.env.change`	The gneeration at which the environment starts changing, if it is not immediate.
`generation`	The current generation being plotted.
`del.loci`	The number of deleterious loci simulated.
`xlimits`	A smaller range on the x-axis to plot, if desired.
`plot.legend`	Whether to include a legend or not on the fitness and deleterious mutation number plots.
`Vs`	The value of selection variance.
`quantiles`	The value of the two quantiles to plot for the selection distribution around the optimum.

Creates 1-D plots over the landscape for population size, fitness, numbers of deleterious mutations, and environmental optimum match to the quantitative trait.

Kimberly J Gilbert

Nemo is created and maintained by Fred Guillaume. The manual and source files are available online.

kjgilbert/aNEMOne documentation built on May 20, 2019, 10:25 a.m.