Description Usage Arguments Value Author(s) References
View source: R/WestGridFunctions.R
Take an individual Nemo .ini file and make a Westgrid PBS file for either orcinus, bugaboo, or grex servers.
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filename |
The full name of the .ini file for which the PBS file is being created. |
input.directory |
The directory on the Westgrid server which holds the nemo .ini file. Defaults are set for each server. |
nemo.directory |
The directory on the Westgrid server from which the nemo executable is called. Defaults are set for each server. |
RAM |
The amount of RAM the run will be allowed to use, there is no default, and must include gb, mb, or kb in specification, e.g. "6gb". |
walltime |
Default is set at max for specified server (except bugaboo, which is set to default at 500 hours), but other lengths can be specified here in units "100:00:00" hours:minutes:seconds. |
westgrid.server |
Which westgrid server the PBS file is meant for. Options are "grex", "orcinus" or "bugaboo" currently. |
Creates PBS files from a .ini file for running Nemo on Westgrid's Orcinus, Bugaboo, or Grex servers. *IMPORTANT NOTE* Must have files "MiddleLine.txt", "GrexLine.txt", and "LastLine.txt" in the same directory for make.pbs to work properly, as it concatenates text from those files into the final PBS file.
Kimberly J Gilbert
Nemo is created and maintained by Fred Guillaume. The manual and source files are available online.
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