make.pbs: Make Westgrid PBS files

In kjgilbert/aNEMOne: Create Nemo input files and analyze Nemo output files

Description

Take an individual Nemo .ini file and make a Westgrid PBS file for either orcinus, bugaboo, or grex servers.

Usage

make.pbs(filename, input.directory = NULL, nemo.directory = NULL, RAM,
  walltime = NULL, westgrid.server = NULL)

Arguments

filename	The full name of the .ini file for which the PBS file is being created.
input.directory	The directory on the Westgrid server which holds the nemo .ini file. Defaults are set for each server.
nemo.directory	The directory on the Westgrid server from which the nemo executable is called. Defaults are set for each server.
RAM	The amount of RAM the run will be allowed to use, there is no default, and must include gb, mb, or kb in specification, e.g. "6gb".
walltime	Default is set at max for specified server (except bugaboo, which is set to default at 500 hours), but other lengths can be specified here in units "100:00:00" hours:minutes:seconds.
westgrid.server	Which westgrid server the PBS file is meant for. Options are "grex", "orcinus" or "bugaboo" currently.

Value

Creates PBS files from a .ini file for running Nemo on Westgrid's Orcinus, Bugaboo, or Grex servers. *IMPORTANT NOTE* Must have files "MiddleLine.txt", "GrexLine.txt", and "LastLine.txt" in the same directory for make.pbs to work properly, as it concatenates text from those files into the final PBS file.

Author(s)

Kimberly J Gilbert

References

Nemo is created and maintained by Fred Guillaume. The manual and source files are available online.

kjgilbert/aNEMOne documentation built on May 20, 2019, 10:25 a.m.