multi.pbs: Make Westgrid PBS files

In kjgilbert/aNEMOne: Create Nemo input files and analyze Nemo output files

Description

Take an individual Nemo .ini file and make a Westgrid PBS file for either orcinus, bugaboo, or grex servers.

Usage

multi.pbs(ini.file.directory, RAM, walltime = NULL, server,
  input.directory = NULL, nemo.directory = NULL)

Arguments

ini.file.directory	The directory containing .ini files for which PBS scripts will be made. Any file in this directory with the expression ".ini" in its name will be used to make a PBS file.
RAM	The amount of RAM the run will be allowed to use, there is no default, and must include gb, mb, or kb in specification, e.g. "6gb".
walltime	Default is set at max for specified server (except bugaboo, which is set to default at 500 hours), but other lengths can be specified here in units "100:00:00" hours:minutes:seconds.
server	Which westgrid server the PBS file is meant for. Options are "grex", "orcinus" or "bugaboo" currently.
input.directory	The directory on the Westgrid server which holds the nemo .ini file. Defaults are set for each server.
nemo.directory	The directory on the Westgrid server from which the nemo executable is called. Defaults are set for each server.

Value

Creates PBS files from a .ini file for running Nemo on Westgrid's Orcinus, Bugaboo, or Grex servers.

Author(s)

Kimberly J Gilbert

References

Nemo is created and maintained by Fred Guillaume. The manual and source files are available online.

kjgilbert/aNEMOne documentation built on May 20, 2019, 10:25 a.m.